Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq1558 201 3e-47 >seq1558 Length=203828 Score = 201 bits (222), Expect = 3e-47 Identities = 210/273 (77%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 20211 ATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTAC 20270 ||||||||||||| ||| | |||||||||||||||||||||||||| ||||| ||| Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 20271 ACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTA 20330 |||||||| | ||||| |||||||| | || ||||||||| |||| || || | || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 20331 CAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGAC-AACAATGGT 20389 | ||||| || || | |||||||||||||| ||||| || | | ||| |||| ||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAA-GGT 48901 Query 20390 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATG 20449 ||||| | | |||||||| ||||| |||| |||||||| | || | || || ||| Sbjct 48900 CGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 48841 Query 20450 CATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 || || || || ||||| |||||||| || ||| Sbjct 48840 CACGAGCGTAACGCTCACAACTTCCCTCTAGAC 48808 Score = 201 bits (222), Expect = 3e-47 Identities = 210/273 (77%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 20211 ATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTAC 20270 ||||||||||||| ||| | |||||||||||||||||||||||||| ||||| ||| Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 20271 ACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTA 20330 |||||||| | ||||| |||||||| | || ||||||||| |||| || || | || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 20331 CAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGAC-AACAATGGT 20389 | ||||| || || | |||||||||||||| ||||| || | | ||| |||| ||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAA-GGT 145302 Query 20390 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATG 20449 ||||| | | |||||||| ||||| |||| |||||||| | || | || || ||| Sbjct 145303 CGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 145362 Query 20450 CATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 || || || || ||||| |||||||| || ||| Sbjct 145363 CACGAGCGTAACGCTCACAACTTCCCTCTAGAC 145395 Score = 194 bits (214), Expect = 5e-45 Identities = 184/233 (79%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 19982 ATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCAC 20041 ||||| ||||| ||||||| |||| | ||||||||||| ||||| ||||| || |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 20042 CCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCAC 20101 || ||||||||| | ||||| ||||||||||||||||| ||| ||||| || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 20102 GGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAG--AACT 20159 ||||| | ||||| || || | | ||||| || |||||| | ||| |||| ||| Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAA--TCAGCTAACG 50951 Query 20160 ATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCAT 20212 | |||||| || || ||||||||||| || || ||||| ||||| |||||| Sbjct 50950 AAGGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 194 bits (214), Expect = 5e-45 Identities = 184/233 (79%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 19982 ATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCAC 20041 ||||| ||||| ||||||| |||| | ||||||||||| ||||| ||||| || |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 20042 CCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCAC 20101 || ||||||||| | ||||| ||||||||||||||||| ||| ||||| || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 20102 GGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAG--AACT 20159 ||||| | ||||| || || | | ||||| || |||||| | ||| |||| ||| Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAA--TCAGCTAACG 143252 Query 20160 ATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCAT 20212 | |||||| || || ||||||||||| || || ||||| ||||| |||||| Sbjct 143253 AAGGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 122 bits (134), Expect = 3e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 19637 GATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGA 19696 ||||| ||||| ||||| || || ||| |||||||| || ||||||||||| | || Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 19697 GCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGT 19756 || || | || | || || ||||| || |||||||||||||||||||||||| | Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 19757 TCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTC 19816 || || || || ||| | |||||||| || || | ||||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 19817 ATTGGCATCTA-TGCTTACATGGG 19839 | || | || ||| |||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGG 53782 Score = 122 bits (134), Expect = 3e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 19637 GATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGA 19696 ||||| ||||| ||||| || || ||| |||||||| || ||||||||||| | || Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 19697 GCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGT 19756 || || | || | || || ||||| || |||||||||||||||||||||||| | Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 19757 TCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTC 19816 || || || || ||| | |||||||| || || | ||||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 19817 ATTGGCATCTA-TGCTTACATGGG 19839 | || | || ||| |||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGG 140421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148826046481164