Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq1558 196 1e-45 >seq1558 Length=203828 Score = 196 bits (216), Expect = 1e-45 Identities = 207/270 (77%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 29341 GGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACAC 29400 ||||||||||| ||| | ||||||||||| ||||||||||| || ||||| ||||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 29401 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 29460 |||||| | ||||| |||||||| | || ||||||||| |||| || || | || || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 29461 ATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACA-ACAATGGTCG 29519 ||||| || || | |||||||| ||||| ||||| || | | ||| |||| ||||| Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAA-GGTCG 48899 Query 29520 TGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCA 29579 ||| | || |||||||| || | |||| || |||||| | || | ||||||||||| Sbjct 48898 TGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCA 48839 Query 29580 TGAGCGTAATGCTCATAACTTCCCACTTGA 29609 |||||||| ||||| |||||||| || || Sbjct 48838 CGAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 196 bits (216), Expect = 1e-45 Identities = 207/270 (77%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 29341 GGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACAC 29400 ||||||||||| ||| | ||||||||||| ||||||||||| || ||||| ||||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 29401 TTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACA 29460 |||||| | ||||| |||||||| | || ||||||||| |||| || || | || || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 29461 ATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGAC-AACAATGGTCG 29519 ||||| || || | |||||||| ||||| ||||| || | | ||| |||| ||||| Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAA-GGTCG 145304 Query 29520 TGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCA 29579 ||| | || |||||||| || | |||| || |||||| | || | ||||||||||| Sbjct 145305 TGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCA 145364 Query 29580 TGAGCGTAATGCTCATAACTTCCCACTTGA 29609 |||||||| ||||| |||||||| || || Sbjct 145365 CGAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 154 bits (170), Expect = 4e-33 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29110 ATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCAC 29169 || || || || ||||||| |||| | || |||||||| ||||| ||||| || |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 29170 CCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCAC 29229 || ||||||||| | || |||||||| || |||||||| || |||| || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 29230 GGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTAT 29289 ||||| | || || || || | | ||||| || |||||| || || ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCA 29339 |||||| || || ||||||||||| ||||| ||||| ||||| ||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 154 bits (170), Expect = 4e-33 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 29110 ATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCAC 29169 || || || || ||||||| |||| | || |||||||| ||||| ||||| || |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 29170 CCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCAC 29229 || ||||||||| | || |||||||| || |||||||| || |||| || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 29230 GGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTAT 29289 ||||| | || || || || | | ||||| || |||||| || || ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCA 29339 |||||| || || ||||||||||| ||||| ||||| ||||| ||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 118 bits (130), Expect = 3e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 28765 GATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGA 28824 ||||| ||||| ||||| || | || |||||| || || ||||||||||| | || Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 28825 GCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAAT 28884 || || | || | || || ||||| || |||||||||||||||||||||||| | Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 28885 TCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTC 28944 || || || || ||| | |||||||| || || | ||||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 28945 ATTGGCGTCTA-TGCTTACATGGG 28967 | || || || ||| |||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGG 53782 Score = 118 bits (130), Expect = 3e-22 Identities = 150/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28765 GATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGA 28824 ||||| ||||| ||||| || | || |||||| || || ||||||||||| | || Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 28825 GCCGTCGTACCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAAT 28884 || || | || | || || ||||| || |||||||||||||||||||||||| | Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 28885 TCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTC 28944 || || || || ||| | |||||||| || || | ||||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 28945 ATTGGCGTCTA-TGCTTACATGGG 28967 | || || || ||| |||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGG 140421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146662886503068