Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq1558 183 9e-42 >seq1558 Length=203828 Score = 183 bits (202), Expect = 9e-42 Identities = 176/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 19206 TGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTT 19265 |||||| ||||||| |||| | |||||||| || ||||| |||||||| |||||||| || Sbjct 51123 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 51064 Query 19266 CCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325 ||||||| | ||||| |||||||| ||||| || ||| |||| || ||||||||||| Sbjct 51063 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 51004 Query 19326 GCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 | ||||| || || | | |||||||| |||||| | | ||| ||| | || || Sbjct 51003 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 50944 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCAT 19431 | || || ||||||||||| ||||| |||||||| ||||||||| Sbjct 50943 CCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 183 bits (202), Expect = 9e-42 Identities = 176/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 19206 TGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTT 19265 |||||| ||||||| |||| | |||||||| || ||||| |||||||| |||||||| || Sbjct 143080 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 143139 Query 19266 CCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTC 19325 ||||||| | ||||| |||||||| ||||| || ||| |||| || ||||||||||| Sbjct 143140 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 143199 Query 19326 GCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTA 19385 | ||||| || || | | |||||||| |||||| | | ||| ||| | || || Sbjct 143200 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 143259 Query 19386 CAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCAT 19431 | || || ||||||||||| ||||| |||||||| ||||||||| Sbjct 143260 CCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 181 bits (200), Expect = 3e-41 Identities = 211/282 (75%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 19430 ATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTAC 19489 |||| || |||||||| || || ||||| ||||| || |||||||| ||||| ||| Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 19490 ATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCA 19549 | ||||| || ||||||||||| || | || |||||||| | || | || || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 19550 CCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA-ACAATGGT 19608 | |||||||||||||| || || || ||||| ||||| || | | ||| |||| ||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAA-GGT 48901 Query 19609 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATG 19668 ||||| | | |||||||| ||||| |||| ||||||||| | || | || |||||| Sbjct 48900 CGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 48841 Query 19669 CACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCTACA 19710 ||||| ||||| ||||| |||||||| || || || ||| || Sbjct 48840 CACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCA 48799 Score = 181 bits (200), Expect = 3e-41 Identities = 211/282 (75%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 19430 ATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTAC 19489 |||| || |||||||| || || ||||| ||||| || |||||||| ||||| ||| Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 19490 ATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCA 19549 | ||||| || ||||||||||| || | || |||||||| | || | || || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 19550 CCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGAC-AACAATGGT 19608 | |||||||||||||| || || || ||||| ||||| || | | ||| |||| ||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAA-GGT 145302 Query 19609 CGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATG 19668 ||||| | | |||||||| ||||| |||| ||||||||| | || | || |||||| Sbjct 145303 CGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 145362 Query 19669 CACGAACGTAATGCTCATAACTTCCCACTTGATTTGGCTACA 19710 ||||| ||||| ||||| |||||||| || || || ||| || Sbjct 145363 CACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCA 145404 Score = 127 bits (140), Expect = 6e-25 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18856 GATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGA 18915 ||||| ||||| || || ||| |||| ||||||||| || ||||||||||| | || Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 18916 GCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAAT 18975 || || | || | || || ||||| || |||||||||||||||||||||||| | Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 18976 TCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTC 19035 || || || || ||| | |||||||| || || | ||||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 19036 ATTGGCGTCTA-TGCTTACATGGG 19058 | || || || ||| |||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGG 53782 Score = 127 bits (140), Expect = 6e-25 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18856 GATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGA 18915 ||||| ||||| || || ||| |||| ||||||||| || ||||||||||| | || Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 18916 GCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAAT 18975 || || | || | || || ||||| || |||||||||||||||||||||||| | Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 18976 TCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTC 19035 || || || || ||| | |||||||| || || | ||||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 19036 ATTGGCGTCTA-TGCTTACATGGG 19058 | || || || ||| |||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGG 140421 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 19060 CGCGAGTGGGAACTTAGCTATC-GACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTC 19118 || ||||||||| ||| || || | |||| ||||| || ||||| ||| || ||||| Sbjct 52368 CGTGAGTGGGAA-TTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTC 52310 Query 19119 AGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTT 19178 |||||| || || ||||| || || || ||| | || || || | || |||||||| || Sbjct 52309 AGCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATT 52250 Query 19179 TAGCGACGCTATGCCTTTGGGT 19200 |||| ||||||||| ||| Sbjct 52249 CTCTGACGGTATGCCTTTAGGT 52228 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 19060 CGCGAGTGGGAACTTAGCTATC-GACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTC 19118 || ||||||||| ||| || || | |||| ||||| || ||||| ||| || ||||| Sbjct 141835 CGTGAGTGGGAA-TTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTC 141893 Query 19119 AGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTT 19178 |||||| || || ||||| || || || ||| | || || || | || |||||||| || Sbjct 141894 AGCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATT 141953 Query 19179 TAGCGACGCTATGCCTTTGGGT 19200 |||| ||||||||| ||| Sbjct 141954 CTCTGACGGTATGCCTTTAGGT 141975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141146188570764