Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1501 105 6e-18 >seq1501 Length=566706 Score = 105 bits (116), Expect = 6e-18 Identities = 171/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| | || || | |||||||||| ||| || ||| |||| || ||||| | Sbjct 384934 TGTACTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGT 384875 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 147622 || || || ||||| ||| ||| | |||||||| || ||||||||| || || | Sbjct 384874 TGGACTTGCGGTTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTCTCCACCTGGG 384815 Query 147623 TTTCAACGAT---AAACCTATGCAGGTCCTGCGCTCGCACC-CGCTGCCGATAGCGGCCC 147678 || | ||| ||||| ||| | |||||| |||||| ||| || | |||||||| Sbjct 384814 CCTCCAGGATGGCAAACCA---CAGCTGCTGCGCGCGCACCACGCGGC-GCGAGCGGCCC 384759 Query 147679 TCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCG 147738 || | |||||| ||||| ||||||||||| || || |||| ||||| |||||| Sbjct 384758 TCCTGCTCGTACTTGAGGTACAGGCGCTCAAACTCCTCACCCCAGCAGTCGGCCAGGCCG 384699 Query 147739 GG 147740 || Sbjct 384698 GG 384697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601917996880