Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1553 80.6 8e-12 seq1496 80.6 8e-12 seq1472 80.6 8e-12 >seq1553 Length=3156931 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||| || |||| | | Sbjct 2713128 GCGGAATTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCTAGTTCGATC 2713187 Query 2829 CCGG 2832 | || Sbjct 2713188 CTGG 2713191 >seq1496 Length=494813 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||| || |||| | | Sbjct 328679 GCGGAATTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCTAGTTCGATC 328738 Query 2829 CCGG 2832 | || Sbjct 328739 CTGG 328742 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||| || |||| | | Sbjct 331394 GCGGAATTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCTAGTTCGATC 331453 Query 2829 CCGG 2832 | || Sbjct 331454 CTGG 331457 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||| || |||| | | Sbjct 397812 GCGGAATTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCTAGTTCGATC 397753 Query 2829 CCGG 2832 | || Sbjct 397752 CTGG 397749 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||| || |||| | | Sbjct 444710 GCGGAATTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCTAGTTCGATC 444769 Query 2829 CCGG 2832 | || Sbjct 444770 CTGG 444773 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||| || |||| | | Sbjct 446274 GCGGAATTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCTAGTTCGATC 446215 Query 2829 CCGG 2832 | || Sbjct 446214 CTGG 446211 >seq1472 Length=307651 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||| || |||| | | Sbjct 92940 GCGGAATTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCTAGTTCGATC 92999 Query 2829 CCGG 2832 | || Sbjct 93000 CTGG 93003 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||| || |||| | | Sbjct 96497 GCGGAATTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCGCTAGTTCGATC 96556 Query 2829 CCGG 2832 | || Sbjct 96557 CTGG 96560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849329912910