Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1501 111 2e-19 seq1535 98.7 1e-15 >seq1501 Length=566706 Score = 111 bits (122), Expect = 2e-19 Identities = 253/376 (67%), Gaps = 10/376 (3%) Strand=Plus/Plus Query 8840 TGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAA 8899 ||||||| |||||| ||||||| ||||||||||||| | || | || || |||| | Sbjct 385648 TGCGCAACTCGCTGCTGGTGGCACCCATGCCCACCGCCTCCACCTCGCAGATCCTGGGCA 385707 Query 8900 ACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCG 8959 ||||||| | ||||||||| | |||| ||| | |||||| | || ||| || |||||| Sbjct 385708 ACAACGAGTGCTTTGAGCCCTACACCTCGAACATCTACGTGCGCCGCGTGCTGTCCGGCG 385767 Query 8960 ATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGT---TTACG 9016 | || || | || | || || ||| |||| ||| | |||| | | || Sbjct 385768 AGTTCACCGTGGTCAACCAGCACCTGCTGCACGACCTGAACCGCATGGGCATCTGGTCCG 385827 Query 9017 ACGACAAAATGCGCGATGCCATCGTGGAAGCCAACGGCAGCGTTCAGAACATTGACGCGG 9076 |||| | | ||| || | |||| || |||||| ||| | | | | || | Sbjct 385828 CCGACCTGAAGAACGA-GC--TGGTGGCGGCGAACGGCTCCGTGCTGGAGCTGGA---GA 385881 Query 9077 TGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCTGA 9136 | || | | | || | |||||| || || || ||||| || ||||| |||||||| Sbjct 385882 TCCCCGAGGAGCTCAAGGGGCTGTACAAGACGGTGTGGGAGATCAAGCAGCGCACGCTGG 385941 Query 9137 TCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCG 9196 | | |||||| || || | ||||| | ||||| ||||| || || ||||||||| Sbjct 385942 TGGACATGGCCGCCGACCGCGGCGCCTACATTGACCAGAGCCAGAGCTTCAACGTGTTCA 386001 Query 9197 TAGCCG-CACCAACTT 9211 | ||| | ||||||| Sbjct 386002 TGCCCGACCCCAACTT 386017 >seq1535 Length=1731330 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| ||||| || ||||| ||||| || |||||||||||| | | |||| | Sbjct 1340473 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 1340532 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| || ||||| ||||| || ||||||| ||||||||| || || || |||||| Sbjct 1340533 CCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCT 1340589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505388557366160