Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq1558 637 5e-178 >seq1558 Length=203828 Score = 637 bits (706), Expect = 5e-178 Identities = 751/1016 (74%), Gaps = 0/1016 (0%) Strand=Plus/Minus Query 159376 TGGTTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 159435 ||||| |||| | |||||||||||| | ||| || || || || || |||||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 159436 GGACTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACT 159495 || | |||| | || |||||| | || | || |||||| | ||||| || ||| Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 159496 TTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTT 159555 || | || ||||| || || ||| | |||| ||| ||| | |||||| ||| || Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 159556 CTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 159615 | || |||||||| || || |||||| | ||||| ||| |||||||| | ||||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 159616 GGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTT 159675 ||||| || ||||||| || ||| || ||||| |||||||| || | ||| | || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 159676 GTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCT 159735 |||||| | ||||||||||| | | | || ||||| ||||| || || |||||||||||| Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 159736 CGTCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 159795 ||| ||| | ||||| ||||| || ||||| ||||| | || |||||||| || Sbjct 175233 CGTTCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTC 175174 Query 159796 GTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTC 159855 || |||||||| || || ||| | ||||| || ||||||||||||||||||||| Sbjct 175173 GTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTC 175114 Query 159856 GGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTC 159915 || ||||| || ||||| | ||| | || ||| | || ||||||||||||||||| || Sbjct 175113 GGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTT 175054 Query 159916 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATC 159975 ||||| ||||| |||||||| ||||||||| | |||||| || | || ||||| || Sbjct 175053 AACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATT 174994 Query 159976 CATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAG 160035 || ||||||||||| || |||||||| || ||||| || || || |||||||| Sbjct 174993 CACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCGT 174934 Query 160036 GCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160095 || || | ||||| || | ||||| || || |||||||| ||||| ||||| |||||| Sbjct 174933 GCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGG 174874 Query 160096 TCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 160155 || || |||||||||||||| || |||||||| || |||||||| || |||||||| || Sbjct 174873 TCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTA 174814 Query 160156 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTT 160215 || || || | ||||| |||| ||||||| || | ||| | ||| | ||| | Sbjct 174813 GTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTA 174754 Query 160216 CGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACC 160275 ||||||||||| ||||| || |||||| | || || ||||| |||||||| || || Sbjct 174753 CGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACA 174694 Query 160276 TTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGAT 160335 |||||||| || ||||| || | || ||||| |||||||||||||||| || || Sbjct 174693 TTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGAC 174634 Query 160336 CAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 |||||||| ||| || | |||||||| |||||| |||| | |||||||| || Sbjct 174633 CAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCT 174578 Score = 232 bits (256), Expect = 8e-56 Identities = 214/271 (79%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 158382 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 158441 |||| ||||| |||||| | ||||||||||||||||| ||||||||||| ||||| || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 158442 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAA 158501 |||||||| | ||||| ||||| || |||| || |||||||| || | || | |||| Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 158502 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 158561 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 158562 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGC 158621 |||| | ||||| |||||||| | | ||||| ||| | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 158622 ATGAGCGTAACGCACACAACTTCCCACTGGA 158652 | ||||||||||| ||||||||||| || || Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 232 bits (256), Expect = 8e-56 Identities = 214/271 (79%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 158382 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 158441 |||| ||||| |||||| | ||||||||||||||||| ||||||||||| ||||| || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 158442 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAA 158501 |||||||| | ||||| ||||| || |||| || |||||||| || | || | |||| Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 158502 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 158561 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 158562 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGC 158621 |||| | ||||| |||||||| | | ||||| ||| | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 158622 ATGAGCGTAACGCACACAACTTCCCACTGGA 158652 | ||||||||||| ||||||||||| || || Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 214 bits (236), Expect = 2e-50 Identities = 186/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 158153 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158212 |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 158213 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158272 || ||||| ||| | ||||||||||| ||||||||||| || | ||||| |||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 158273 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 158332 || | | |||||||| || | | |||||||| ||||||| || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCAT 158383 ||||| ||||||||||||||||| || |||||||| || || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 214 bits (236), Expect = 2e-50 Identities = 186/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 158153 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158212 |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 158213 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158272 || ||||| ||| | ||||||||||| ||||||||||| || | ||||| |||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 158273 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 158332 || | | |||||||| || | | |||||||| ||||||| || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 158333 GGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCAT 158383 ||||| ||||||||||||||||| || |||||||| || || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 165 bits (182), Expect = 9e-36 Identities = 144/179 (80%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 157808 GACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 157867 || || ||||| ||||||||| | ||||| || | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 157868 GCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCA 157927 || || | || | ||| |||||||||||||| ||||||||||| || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 157928 TCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCT 157986 ||||| ||||||||| | || ||||||||||||| ||||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 53806 Score = 165 bits (182), Expect = 9e-36 Identities = 144/179 (80%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 157808 GACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 157867 || || ||||| ||||||||| | ||||| || | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 157868 GCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCA 157927 || || | || | ||| |||||||||||||| ||||||||||| || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 157928 TCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCT 157986 ||||| ||||||||| | || ||||||||||||| ||||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCT 140397 Score = 138 bits (152), Expect = 1e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 158012 CGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCT 158071 |||||||||||| | |||| ||||||||||||||| ||||||||| |||||| || || Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 158072 GCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTC 158131 |||||||| |||||||| || |||||| |||| || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 158132 TCCGATGCTATGCCTCTTGGT 158152 || || | ||||||| | ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 138 bits (152), Expect = 1e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 158012 CGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCT 158071 |||||||||||| | |||| ||||||||||||||| ||||||||| |||||| || || Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 158072 GCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTC 158131 |||||||| |||||||| || |||||| |||| || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 158132 TCCGATGCTATGCCTCTTGGT 158152 || || | ||||||| | ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/133 (78%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 || || |||||| | || ||||| | |||||||| || | ||||||||||||||| | Sbjct 55365 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 55306 Query 157736 ATGATTCCTACGT-TGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||| ||| | || | ||| ||||||| ||| || |||||| |||| ||| ||||||||| Sbjct 55305 ATGA-TCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 55248 Query 157794 CCCCTGTGGACAT 157806 | || || ||||| Sbjct 55247 CGCCAGTAGACAT 55235 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/133 (78%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 157676 TTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACTG 157735 || || |||||| | || ||||| | |||||||| || | ||||||||||||||| | Sbjct 138838 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 138897 Query 157736 ATGATTCCTACGT-TGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||| ||| | || | ||| ||||||| ||| || |||||| |||| ||| ||||||||| Sbjct 138898 ATGA-TCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 138955 Query 157794 CCCCTGTGGACAT 157806 | || || ||||| Sbjct 138956 CGCCAGTAGACAT 138968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573012840357600