Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1558 529 2e-145 >seq1558 Length=203828 Score = 529 bits (586), Expect = 2e-145 Identities = 729/1017 (72%), Gaps = 2/1017 (0%) Strand=Plus/Minus Query 182358 TGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCT 182417 |||||||||| | || |||||| || | || || || || || || |||||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 182418 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCT 182477 || | |||| | || |||||| |||| | || |||||| | ||||| || || Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 182478 TTTGTTACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTT 182537 || ||||| ||||| || || ||| | ||| |||| || | |||||| |||||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 182538 CTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 182597 | || |||||||| || || |||||| | ||||| ||| |||||||| | ||||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 182598 GGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTC 182657 ||||| || |||| || ||||| || ||||| |||||||| || | ||| ||| Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 182658 GTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCT 182717 || ||| | |||||||| || | | | ||||||||||||||| | || |||||| ||||| Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 182718 CGCCTGATTGGAATCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATT 182776 || | | | | | | | || ||||| || |||||||| || | || ||||||||||| Sbjct 175233 CGT-TCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATT 175175 Query 182777 CGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTT 182836 ||| || ||||| || || || || || || || |||||| || || || || Sbjct 175174 CGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTT 175115 Query 182837 TGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACT 182896 ||||| || || |||||| | ||| | || ||| | || |||||||||||||||||||| Sbjct 175114 CGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACT 175055 Query 182897 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTAT 182956 ||||| ||||| |||||||| ||||||||| | | |||| || | | ||||||| Sbjct 175054 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 174995 Query 182957 CCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAA 183016 || |||| || || || || || || | ||||| || || || |||||||| Sbjct 174994 TCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCG 174935 Query 183017 AGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTG 183076 || ||| | | || |||| || || || || || |||||||| || || ||||| || Sbjct 174934 TGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTG 174875 Query 183077 GTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTT 183136 ||||||||||||||| ||||| || || || |||||| | |||||||| ||||| || Sbjct 174874 GTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATT 174815 Query 183137 TGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCT 183196 ||||| || | ||||||||| | | ||||||| | | || | ||||| || | Sbjct 174814 AGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTT 174755 Query 183197 TCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGAC 183256 |||||||| || || || ||||||||| | || || ||||| ||||| ||||| || Sbjct 174754 ACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAAC 174695 Query 183257 GTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGA 183316 |||||||| || ||||| ||||| || ||||| | ||||||||| |||| || || Sbjct 174694 ATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 174635 Query 183317 TCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 |||||||| ||| || | |||||||||||||| |||| | |||||||| || Sbjct 174634 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCT 174578 Score = 219 bits (242), Expect = 5e-52 Identities = 210/269 (78%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 181689 GGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCAC 181748 |||||||||||||| | ||||||||||| ||||| ||||||||||| |||||| | ||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 181749 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 181808 |||||| | || || ||||| ||| | || || |||||||| || | || || || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 181809 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGT 181868 |||||||| ||| | || || |||||||||||||| || | | ||| |||||| ||| Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 48898 Query 181869 GTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCAC 181928 || || ||||| ||||||||| | |||||||||| | || |||||||| |||||| Sbjct 48897 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 48838 Query 181929 GAGCGCAACGCGCACAACTTCCCGCTTGA 181957 ||||| ||||| ||||||||||| || || Sbjct 48837 GAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 219 bits (242), Expect = 5e-52 Identities = 210/269 (78%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 181689 GGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCAC 181748 |||||||||||||| | ||||||||||| ||||| ||||||||||| |||||| | ||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 181749 TTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACC 181808 |||||| | || || ||||| ||| | || || |||||||| || | || || || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 181809 ATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGT 181868 |||||||| ||| | || || |||||||||||||| || | | ||| |||||| ||| Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 145305 Query 181869 GTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCAC 181928 || || ||||| ||||||||| | |||||||||| | || |||||||| |||||| Sbjct 145306 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 145365 Query 181929 GAGCGCAACGCGCACAACTTCCCGCTTGA 181957 ||||| ||||| ||||||||||| || || Sbjct 145366 GAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 203 bits (224), Expect = 4e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 181458 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCAT 181517 ||||||||||| ||||||| |||| | || ||||||||||| |||||||| || ||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 181518 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCAC 181577 || ||||||||||| ||||| || |||||||| ||||||||| | ||| || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 181578 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTAT 181637 |||||||| ||||| || || | ||||||| || ||||||| || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 181638 GGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCA 181687 |||||| ||||| ||||||||||| || |||||||| || || || || Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 203 bits (224), Expect = 4e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 181458 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCAT 181517 ||||||||||| ||||||| |||| | || ||||||||||| |||||||| || ||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 181518 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCAC 181577 || ||||||||||| ||||| || |||||||| ||||||||| | ||| || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 181578 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTAT 181637 |||||||| ||||| || || | ||||||| || ||||||| || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 181638 GGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCA 181687 |||||| ||||| ||||||||||| || |||||||| || || || || Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 158 bits (174), Expect = 1e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 181113 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 181172 || || ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 181173 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 181232 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 181233 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTT 181292 || || || |||||| | || ||||||||||||| |||||| | || | |||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 181293 ATCGGCATTTA-TGCATACATGGG 181315 | || | || ||| |||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGG 53782 Score = 158 bits (174), Expect = 1e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 181113 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 181172 || || ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 181173 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 181232 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 181233 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTT 181292 || || || |||||| | || ||||||||||||| |||||| | || | |||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 181293 ATCGGCATTTA-TGCATACATGGG 181315 | || | || ||| |||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGG 140421 Score = 134 bits (148), Expect = 2e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 181317 CGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCT 181376 ||||| |||||| | |||| ||| ||||||||||| || |||||| ||| || ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 181377 GCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTC 181436 |||||||| || ||||| || ||||||||| |||| || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 181437 TCTGACGCAATGCC 181450 ||||||| ||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 134 bits (148), Expect = 2e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 181317 CGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCT 181376 ||||| |||||| | |||| ||| ||||||||||| || |||||| ||| || ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 181377 GCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTC 181436 |||||||| || ||||| || ||||||||| |||| || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 181437 TCTGACGCAATGCC 181450 ||||||| ||||| Sbjct 141955 TCTGACGGTATGCC 141968 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 55366 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 55307 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 ||||| ||| ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 55306 CATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 55248 Query 181099 CCCCTGTGGACATC 181112 | || || |||||| Sbjct 55247 CGCCAGTAGACATC 55234 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 180980 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 181039 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 138837 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 138896 Query 181040 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 181098 ||||| ||| ||| | | ||||| ||| || |||||| |||| ||| ||||||||| Sbjct 138897 CATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTC 138955 Query 181099 CCCCTGTGGACATC 181112 | || || |||||| Sbjct 138956 CGCCAGTAGACATC 138969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614605630322240