Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1558 542 4e-149 >seq1558 Length=203828 Score = 542 bits (600), Expect = 4e-149 Identities = 727/1004 (72%), Gaps = 12/1004 (1%) Strand=Plus/Minus Query 175863 GAAGACTGGCTTC-TCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCT 175921 || |||||||||| ||| ||| | || | || | || ||||| || ||| |||| | Sbjct 175578 GATGACTGGCTTCGTCA-AGACCGTTTCGTATTCGTAGGTTGGTCAGGTTTATTACTATT 175520 Query 175922 TCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTG 175981 || |||||| |||| | || || ||| | ||||| || ||||| || || || Sbjct 175519 CCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATG 175460 Query 175982 GTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCGGCTGT 176041 ||| || |||||| | ||| |||| || | || ||| |||||| | ||||| ||||| Sbjct 175459 GTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGT 175400 Query 176042 CTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCA 176101 || || |||||| | ||||| ||| |||||||| | |||||||||| ||| |||| Sbjct 175399 TTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCA 175340 Query 176102 GGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGG 176161 || || ||| || ||| |||||||| || | ||| | || |||||| | ||||| Sbjct 175339 AGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGG 175280 Query 176162 TGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTA- 176220 ||| || | | | ||||| ||||||||||||||||||||| | || | ||| ||| Sbjct 175279 TGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGT-TCA---GTAA 175224 Query 176221 ---TCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGT 176277 | ||||| |||||||| ||||| ||| | || || |||||||| || || | Sbjct 175223 ACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTAT 175164 Query 176278 TTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAG 176337 | || | |||||| |||||||||| ||||||||||| || || ||||| || | Sbjct 175163 TCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTG 175104 Query 176338 CAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCC 176397 | ||||| | ||| | || || | || |||||||||||||||||||| ||||| |||| Sbjct 175103 CTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCC 175044 Query 176398 ATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTA 176457 | |||||||| ||||||||| | |||||| || || ||| ||| || || || | || Sbjct 175043 ACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTA 174984 Query 176458 CTGTTGAAAATACCCTATATGAAGATGGAGAACAGAAC-AACACCTTCACTGCGTTCGAT 176516 |||||||||| || ||| ||||| || || | | | ||||| ||| ||| ||| | Sbjct 174983 CTGTTGAAAACACATTATTCGAAGACGGTGA-CGGTGCTAACACATTCCGTGCATTCAAC 174925 Query 176517 TCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATC 176576 | || |||| ||||| || || || ||||||||||| ||||| |||||||| |||||| Sbjct 174924 CCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATC 174865 Query 176577 TTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTC 176636 ||||| ||||| || ||| || ||||||||||||||||| ||||| || || || || Sbjct 174864 TTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTA 174805 Query 176637 ATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTAT 176696 | ||||||||| | |||||| | | || | ||||| || | |||||||| Sbjct 174804 ACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTAC 174745 Query 176697 GATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTACACA 176756 || || || ||||||||| | || || ||||| ||||| || ||||| |||||||| Sbjct 174744 GACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACT 174685 Query 176757 AAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACCACAT 176816 || ||||| |||||||||||||| | | || |||||||| || || |||||||| Sbjct 174684 AAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACAC 174625 Query 176817 GAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 || || |||||||| |||||||| |||| | |||||||| Sbjct 174624 GAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGC 174581 Score = 224 bits (248), Expect = 1e-53 Identities = 216/277 (78%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 175174 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCC 175233 |||| ||||| |||||| | ||||||||||||||||| ||||||||||| || ||| | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 175234 ACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCA 175293 ||||||||||||| || ||||| || | ||||| |||||||| || | ||| | || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 175294 CAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTA 175353 | |||||||||||| | || ||||||||||||||||| || || | ||| ||||||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 175354 GAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGC 175413 | ||| | ||||| ||||| || | | ||| | ||| | || ||||||||||||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 175414 ATGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 | ||| | || || ||||||||||| ||||| || || Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGC 48803 Score = 224 bits (248), Expect = 1e-53 Identities = 216/277 (78%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 175174 ATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCC 175233 |||| ||||| |||||| | ||||||||||||||||| ||||||||||| || ||| | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 175234 ACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCA 175293 ||||||||||||| || ||||| || | ||||| |||||||| || | ||| | || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 175294 CAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTA 175353 | |||||||||||| | || ||||||||||||||||| || || | ||| ||||||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 175354 GAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGC 175413 | ||| | ||||| ||||| || | | ||| | ||| | || ||||||||||||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 175414 ATGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 | ||| | || || ||||||||||| ||||| || || Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGC 145400 Score = 205 bits (226), Expect = 1e-47 Identities = 184/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 174945 ATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCAC 175004 |||||||| || ||||||| |||| | || |||||||||||||| |||||| | |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 175005 CCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCAT 175064 || ||||||||||| || || || ||||| |||||||||||||| |||||||| ||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 175065 GGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTAT 175124 ||||| | ||||| || || | ||||||| |||||||||| || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 175125 GGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCAT 175175 |||||| ||||| ||||||||||| || || ||||| || || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 205 bits (226), Expect = 1e-47 Identities = 184/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 174945 ATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCAC 175004 |||||||| || ||||||| |||| | || |||||||||||||| |||||| | |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 175005 CCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCAT 175064 || ||||||||||| || || || ||||| |||||||||||||| |||||||| ||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 175065 GGTTCACTTGTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTAT 175124 ||||| | ||||| || || | ||||||| |||||||||| || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 175125 GGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCAT 175175 |||||| ||||| ||||||||||| || || ||||| || || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 163 bits (180), Expect = 4e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 174600 GACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGT 174659 || || |||||||||||||| | ||||| || | || || ||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 174660 GCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCC 174719 || || | || | ||| |||||||||||||| |||||||||||||| |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 174720 ACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTT 174779 | || ||||| ||| | |||||||||||||||| |||||| | || | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 174780 ATTGGTATCTACGCCTATATGGG 174802 | ||| | ||| ||| ||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGG 53782 Score = 163 bits (180), Expect = 4e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 174600 GACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGT 174659 || || |||||||||||||| | ||||| || | || || ||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 174660 GCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCC 174719 || || | || | ||| |||||||||||||| |||||||||||||| |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 174720 ACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTT 174779 | || ||||| ||| | |||||||||||||||| |||||| | || | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 174780 ATTGGTATCTACGCCTATATGGG 174802 | ||| | ||| ||| ||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGG 140421 Score = 141 bits (156), Expect = 1e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 174804 CGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCT 174863 |||||||||||| | |||| |||||||||||| | || |||||| |||||| ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 174864 GCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTC 174923 || ||||| || ||||||||||| |||||| |||| || ||| |||| |||||||||||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 174924 TCAGACGCGATGCCCTTGGGT 174944 || |||| ||||| || ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 141 bits (156), Expect = 1e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 174804 CGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACTCT 174863 |||||||||||| | |||| |||||||||||| | || |||||| |||||| ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 174864 GCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTC 174923 || ||||| || ||||||||||| |||||| |||| || ||| |||| |||||||||||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 174924 TCAGACGCGATGCCCTTGGGT 174944 || |||| ||||| || ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729915384621040