Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1558 518 4e-142 >seq1558 Length=203828 Score = 518 bits (574), Expect = 4e-142 Identities = 725/1014 (71%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 179220 TGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCT 179279 |||||||||| | || |||||| || | || || || || || || |||||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 179280 GGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCT 179339 || | |||| | || |||||| |||| | || |||||| | ||||| || || Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 179340 TTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTT 179399 || ||||| ||||| || || ||| | |||| ||| || | || ||| |||||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 179400 CTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 179459 | || |||||||| || || |||||| | ||||| ||| |||||||| | ||||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 179460 GGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTC 179519 ||||| || |||| || ||||| || ||||| |||||||| || | ||| ||| Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 179520 GTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCT 179579 || ||| | |||||||| || | | | ||||||||||||||| | || |||||| ||||| Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 179580 CGCCTGATTGGTATCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATT 179638 || | | | | | | || ||||| || |||||||| || | || ||||||||||| Sbjct 175233 CGT-TCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATT 175175 Query 179639 CGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTT 179698 ||| || ||||| || || || || || || || |||||| || || || || Sbjct 175174 CGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTT 175115 Query 179699 TGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCT 179758 ||||| || || |||||| | ||| | | ||| | || ||||||||||||||||| || Sbjct 175114 CGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACT 175055 Query 179759 CAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTAT 179818 ||||| ||||| |||||||| ||||||||| | |||| | || | | ||||||| Sbjct 175054 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 174995 Query 179819 CCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAA 179878 || || | |||||| || || ||||| | ||||| || || || || || || Sbjct 174994 TCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCG 174935 Query 179879 GGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTG 179938 || || | | ||||||| ||||| || || |||||||| ||||| ||||| ||||| Sbjct 174934 TGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTG 174875 Query 179939 GTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTT 179998 ||| || ||||||||| |||| || |||||||| || |||||||| || |||||||| || Sbjct 174874 GTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATT 174815 Query 179999 TGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCT 180058 || || || | ||||| |||| ||||||| || | ||| | ||||| ||| | Sbjct 174814 AGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTT 174755 Query 180059 TCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGAC 180118 ||||||||||| |||||| || ||||| | || || ||||| || || || || || Sbjct 174754 ACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAAC 174695 Query 180119 CTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGA 180178 |||||||| || ||||||||||| || ||||| | ||||| ||| |||| | || Sbjct 174694 ATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 174635 Query 180179 TCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 |||||||| || || |||||||| |||||||| | ||| | ||||| || Sbjct 174634 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGC 174581 Score = 219 bits (242), Expect = 5e-52 Identities = 211/271 (78%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 178555 ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGC 178614 |||| ||||| |||||| | ||||||||||| ||||| ||||||||||| |||||| | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 178615 ACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCA 178674 |||||||| | || || ||||| ||| | || || |||||||| || | || || | Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 178675 CCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGAC 178734 | |||||||| ||| | || || |||||||||||||| || | | ||| |||||| | Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 178735 GTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGC 178794 |||| || ||||| ||||||||| | |||||||||| | || |||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 178795 ACGAGCGCAACGCGCACAACTTCCCGCTTGA 178825 ||||||| ||||| ||||||||||| || || Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 48809 Score = 219 bits (242), Expect = 5e-52 Identities = 187/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 178326 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCAC 178385 ||||||||||| ||||||| |||| | || |||||||||||||||||||| || |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 178386 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCAC 178445 || ||||||||||| ||||| || |||||||||||||||||| | ||| || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 178446 GGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTAT 178505 |||||||| ||||| || || | | |||||||| ||||||| |||||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 178556 ||||| ||||| ||||||||||| || |||||||| || || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 219 bits (242), Expect = 5e-52 Identities = 187/231 (81%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 178326 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCAC 178385 ||||||||||| ||||||| |||| | || |||||||||||||||||||| || |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 178386 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCAC 178445 || ||||||||||| ||||| || |||||||||||||||||| | ||| || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 178446 GGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTAT 178505 |||||||| ||||| || || | | |||||||| ||||||| |||||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACAT 178556 ||||| ||||| ||||||||||| || |||||||| || || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 219 bits (242), Expect = 5e-52 Identities = 211/271 (78%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 178555 ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGC 178614 |||| ||||| |||||| | ||||||||||| ||||| ||||||||||| |||||| | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 178615 ACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCA 178674 |||||||| | || || ||||| ||| | || || |||||||| || | || || | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 178675 CCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGAC 178734 | |||||||| ||| | || || |||||||||||||| || | | ||| |||||| | Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 178735 GTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGC 178794 |||| || ||||| ||||||||| | |||||||||| | || |||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 178795 ACGAGCGCAACGCGCACAACTTCCCGCTTGA 178825 ||||||| ||||| ||||||||||| || || Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGA 145394 Score = 154 bits (170), Expect = 2e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 177981 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGT 178040 || || ||||||||||| || | ||||| || | || || ||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 178041 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 178100 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 178101 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTC 178160 || || || |||||| | || ||||||||||||| |||||| | || | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 178161 ATTGGTATCTA-TGCATACATGGG 178183 | ||| | || ||| |||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGG 53782 Score = 154 bits (170), Expect = 2e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 177981 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGT 178040 || || ||||||||||| || | ||||| || | || || ||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 178041 GCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 178100 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 178101 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTC 178160 || || || |||||| | || ||||||||||||| |||||| | || | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 178161 ATTGGTATCTA-TGCATACATGGG 178183 | ||| | || ||| |||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGG 140421 Score = 138 bits (152), Expect = 1e-27 Identities = 111/134 (83%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 178185 CGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCT 178244 |||||||||||| | || | ||||||||||||||| || |||||| |||||| ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 178245 GCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTT 178304 ||||||||||| ||||| || || |||||| | || || ||| |||| ||||||||||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 178305 TCTGACGCAATGCC 178318 ||||||| ||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 138 bits (152), Expect = 1e-27 Identities = 111/134 (83%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 178185 CGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCT 178244 |||||||||||| | || | ||||||||||||||| || |||||| |||||| ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 178245 GCTCCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTT 178304 ||||||||||| ||||| || || |||||| | || || ||| |||| ||||||||||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 178305 TCTGACGCAATGCC 178318 ||||||| ||||| Sbjct 141955 TCTGACGGTATGCC 141968 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 || || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 55365 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 55306 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| ||| ||| | | ||||| ||| || |||||| |||| ||| |||||||||| Sbjct 55305 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 55247 Query 177968 CCCTGTGGACATC 177980 || || |||||| Sbjct 55246 GCCAGTAGACATC 55234 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 18753 ATGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCA 18812 ||||| |||||| ||| ||||||||||| || ||||||||| |||||| | |||||| Sbjct 82662 ATGGGATTGTAGTTCAATTGGTTAGAGCACCGCCCTGTCACGGCGGAAGTTGCGGGTTCG 82603 Query 18813 AGTCCCATCAATCCCG 18828 |||||| ||||||||| Sbjct 82602 AGTCCCGTCAATCCCG 82587 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 || || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 138838 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 138897 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| ||| ||| | | ||||| ||| || |||||| |||| ||| |||||||||| Sbjct 138898 ATGATCCCATGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 138956 Query 177968 CCCTGTGGACATC 177980 || || |||||| Sbjct 138957 GCCAGTAGACATC 138969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605997797963040