Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq1558 499 3e-136 >seq1558 Length=203828 Score = 499 bits (552), Expect = 3e-136 Identities = 722/1013 (71%), Gaps = 12/1013 (1%) Strand=Plus/Minus Query 159911 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 159970 || ||||||||| | || |||||||| || || || ||||| || || || | || Sbjct 175578 GATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCAGGT-TTATTACTATT 175520 Query 159971 CCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTG 160029 ||| |||||| |||| | || |||||| | ||||| || ||||||| || || Sbjct 175519 CCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACTTTCGTTACTTCATG 175460 Query 160030 GTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGT 160089 |||||| ||||| | |||| ||| || | || ||| ||||| | ||||| | || Sbjct 175459 GTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACAGCAGCTGT 175400 Query 160090 TAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCA 160149 | || || ||| || ||||| ||| |||||||| || | |||||||| || ||||| Sbjct 175399 TTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGGGGTCCAGAAGCTCA 175340 Query 160150 AGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGG 160209 ||| |||||| | ||| |||||||| || | ||| || || || | || || Sbjct 175339 AGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTCGTTGCTTTACACGG 175280 Query 160210 TGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCGGTA- 160268 ||| || | ||||||| |||||||| |||||||||||| | || ||| || ||| Sbjct 175279 TGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCTCGT----TCAGTAA 175224 Query 160269 ---TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTAT 160325 | ||||| ||||| || ||||| ||||| | || |||||||| || || |||| Sbjct 175223 ACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTCGTTTCAGTAT 175164 Query 160326 TCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAG 160385 |||| || |||||||| ||||| || ||||||| || || || || || || || | Sbjct 175163 TCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTCGGTGTAGCTG 175104 Query 160386 CAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCC 160445 | ||||| | ||| | || ||| | ||||| || ||||||||||| |||||||| |||| Sbjct 175103 CTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTTAACCCATTCC 175044 Query 160446 ATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTA 160505 | |||||||| ||||||||| | |||| | || | | |||| || || || | || Sbjct 175043 ACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTA 174984 Query 160506 CTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATT 160565 |||| || |||||| | | ||||| || || || || || || || || | Sbjct 174983 CTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCGTGCATTCAACC 174924 Query 160566 CGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 160625 | ||||||| ||||| || || |||||||| ||||| ||||| |||||||| || |||| Sbjct 174923 CTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGGTCACAAATCT 174864 Query 160626 TCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 160685 ||||| |||| || |||||||| || |||||||| || |||||||| || || || || | Sbjct 174863 TCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTAGTTCCAGTAA 174804 Query 160686 TGGGTCTTTGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACG 160745 |||||||||| |||||| || | ||| | ||||| || | |||||||||| Sbjct 174803 CTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTTACGTGCTTACG 174744 Query 160746 ATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCA 160805 | ||||| ||||||||| | || || ||||| || ||||| || || |||||||| | Sbjct 174743 ACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTA 174684 Query 160806 AGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATG 160865 | ||||| || || || ||||| | ||||| ||| | || || |||||||| || | Sbjct 174683 AAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACG 174624 Query 160866 AGAACTTTA-TCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAATA 160917 | | |||| | ||||| |||||||| | || | || ||||| || ||||| Sbjct 174623 A-ACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATAATA 174572 Score = 241 bits (266), Expect = 1e-58 Identities = 220/278 (79%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 159085 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 159144 |||||||||| |||||| | ||||||||||||||||| ||||||||||| ||||| || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 159145 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAA 159204 |||||||| | ||||| ||||| || |||| || |||||||| || | || | |||| Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 159205 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 159264 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 159265 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGC 159324 |||| | ||||| |||||||| | | |||||||| | ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 159325 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 159362 | ||||||||||| ||||||||||| || ||| | ||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 241 bits (266), Expect = 1e-58 Identities = 220/278 (79%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 159085 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 159144 |||||||||| |||||| | ||||||||||||||||| ||||||||||| ||||| || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 159145 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAA 159204 |||||||| | ||||| ||||| || |||| || |||||||| || | || | |||| Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 159205 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 159264 | |||||||||||| | |||||||||||||||||||| || | | || || |||| Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 159265 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGC 159324 |||| | ||||| |||||||| | | |||||||| | ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 159325 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCT 159362 | ||||||||||| ||||||||||| || ||| | ||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 210 bits (232), Expect = 2e-49 Identities = 185/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 158856 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158915 |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 158916 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158975 || ||||| ||| | ||||||||||| ||||||||||| || | ||||| |||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 158976 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAT 159035 || | | |||||||| || | | |||||||| ||||||| || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCAT 159086 |||||| ||||| |||||||||||||| || || || || || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 210 bits (232), Expect = 2e-49 Identities = 185/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 158856 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158915 |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 158916 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158975 || ||||| ||| | ||||||||||| ||||||||||| || | ||||| |||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 158976 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAT 159035 || | | |||||||| || | | |||||||| ||||||| || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCAT 159086 |||||| ||||| |||||||||||||| || || || || || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 154 bits (170), Expect = 2e-32 Identities = 142/180 (79%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 158511 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 158570 || || ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 158571 GCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 158630 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 158631 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTT 158690 || || || |||||| | || ||||||||||||| |||||| | || | |||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Score = 154 bits (170), Expect = 2e-32 Identities = 142/180 (79%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 158511 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGT 158570 || || ||||||||||| || | ||||| || | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 158571 GCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCA 158630 || || | ||| |||| |||||||| |||||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 158631 TCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTT 158690 || || || |||||| | || ||||||||||||| |||||| | || | |||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 158715 CGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCT 158774 ||||| |||||| | || | ||| ||||||||||| || |||||| |||||| || || Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 158775 GCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 158834 || ||||| |||||||| || ||||||||| | || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 158835 TCCGATGCTATGCCTCTTGGT 158855 || || | ||||||| | ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 158715 CGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCT 158774 ||||| |||||| | || | ||| ||||||||||| || |||||| |||||| || || Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 158775 GCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 158834 || ||||| |||||||| || ||||||||| | || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 158835 TCCGATGCTATGCCTCTTGGT 158855 || || | ||||||| | ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 55366 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 55307 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 ||||| ||| ||| | | |||| |||| || |||||| |||| ||| ||||||||| Sbjct 55306 CATGATCCCATGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTC 55248 Query 158497 CCCCTGTGGACATC 158510 | || || |||||| Sbjct 55247 CGCCAGTAGACATC 55234 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 158378 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 158437 ||| || |||||| | ||||| || | ||||| | || ||||||||||||| ||| | Sbjct 138837 TTTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAAT 138896 Query 158438 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 158496 ||||| ||| ||| | | |||| |||| || |||||| |||| ||| ||||||||| Sbjct 138897 CATGATCCCATGTCTTCTTACTGCAA-CATCAGTATTCATCATCGCTTTCATCGCTGCTC 138955 Query 158497 CCCCTGTGGACATC 158510 | || || |||||| Sbjct 138956 CGCCAGTAGACATC 138969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552462840576640