Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq1558 562 4e-155 >seq1558 Length=203828 Score = 562 bits (622), Expect = 4e-155 Identities = 735/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Minus Query 180018 TGGTTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCT 180077 |||||||||| | || ||||||||| | ||||| || ||||| || || ||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 180078 GGACTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCT 180137 || || |||| | || |||||| |||| | || |||||| | ||||| || || Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 180138 TTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTT 180197 || || || ||||| || || ||| | ||| |||| || | |||||| |||||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 180198 CTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 180257 | || |||||||| || || |||||| || ||||| ||| |||||||| | ||||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 180258 GGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTC 180317 ||||| || |||| || ||||| || ||||| |||||||| || | ||| ||| Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 180318 GTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCA 180377 || ||| | |||||||| || | ||||||| || ||||| || ||||||||| | || Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 180378 CGTCTTATTGGTA----TCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGT 180433 ||| | ||| | ||||| ||||| || ||||| ||||| | || || ||||| Sbjct 175233 CGT----TCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGT 175178 Query 180434 ATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTC 180493 ||| || ||||| || || |||||| | ||||| || ||||||||||||| || Sbjct 175177 ATTCGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAG 175118 Query 180494 TTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGAC 180553 ||| || ||||| || ||||| | ||| | | || | || ||||||||||||||||| Sbjct 175117 TTTCGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGAC 175058 Query 180554 CCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGC 180613 || ||||| ||||| |||||||| ||||||||| | |||||| || || ||| || Sbjct 175057 ACTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 174998 Query 180614 AATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTT 180673 || || || | ||||| || |||||| | | ||||| || || || ||||| || Sbjct 174997 TATTCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATT 174938 Query 180674 TAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTT 180733 ||||| | | || || | || ||||| ||||||||||| ||||| ||||| || Sbjct 174937 CCGTGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTT 174878 Query 180734 CTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTT 180793 |||||| || ||||||||| |||| || |||||||| || |||||||| || |||||||| Sbjct 174877 CTGGTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTT 174818 Query 180794 GTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAA 180853 || || || || | ||||| |||| ||||||| || | ||| | ||||| || Sbjct 174817 ATTAGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAA 174758 Query 180854 CCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGA 180913 | | ||||||||||| ||||| |||||||| | || || ||||| ||||| ||||| Sbjct 174757 CTTACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGA 174698 Query 180914 GACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGC 180973 || |||||||| || ||||| || | || ||||| | ||||| ||| |||| || Sbjct 174697 AACATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCA 174638 Query 180974 CGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 || |||||||||||| || | |||||||||||||| ||||| | |||||||| Sbjct 174637 AGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGC 174581 Score = 241 bits (266), Expect = 2e-58 Identities = 228/291 (78%), Gaps = 0/291 (0%) Strand=Plus/Minus Query 179567 ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGC 179626 |||| ||||| |||||| | ||||||||||| || || || |||||||| || || || | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 179627 ACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAA 179686 |||||||| | ||||| |||||||| |||| || |||||||||||| | || | |||| Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 48960 Query 179687 CCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGAC 179746 | ||||| |||||| | |||||||||||||||||||| || | | ||| ||||| | Sbjct 48959 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 48900 Query 179747 GTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGC 179806 |||| || ||||| ||||| ||| | | |||||||| || ||||||||||| |||| Sbjct 48899 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 48840 Query 179807 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTA 179857 | ||||||||||| ||||||||||| || ||| | ||| | || | |||| Sbjct 48839 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCAACTAACTCTA 48789 Score = 241 bits (266), Expect = 2e-58 Identities = 228/291 (78%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 179567 ATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGC 179626 |||| ||||| |||||| | ||||||||||| || || || |||||||| || || || | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 179627 ACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAA 179686 |||||||| | ||||| |||||||| |||| || |||||||||||| | || | |||| Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAA 145243 Query 179687 CCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGAC 179746 | ||||| |||||| | |||||||||||||||||||| || | | ||| ||||| | Sbjct 145244 CTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTC 145303 Query 179747 GTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGC 179806 |||| || ||||| ||||| ||| | | |||||||| || ||||||||||| |||| Sbjct 145304 GTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGC 145363 Query 179807 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCTA 179857 | ||||||||||| ||||||||||| || ||| | ||| | || | |||| Sbjct 145364 ACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCTTCAACTAACTCTA 145414 Score = 210 bits (232), Expect = 3e-49 Identities = 185/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 179338 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 179397 |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 179398 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 179457 || ||||| ||| | ||||||||||| ||||||||||| || | ||||| ||||||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 179458 GGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACAGAACTAT 179517 || | | |||||||| || | | |||||||||||||| | || ||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 179518 GGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACAT 179568 ||||| ||||| ||||||||||| || || ||||| || || || ||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 210 bits (232), Expect = 3e-49 Identities = 185/231 (80%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 179338 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 179397 |||||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 179398 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAC 179457 || ||||| ||| | ||||||||||| ||||||||||| || | ||||| ||||||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 179458 GGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACAGAACTAT 179517 || | | |||||||| || | | |||||||||||||| | || ||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 179518 GGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACAT 179568 ||||| ||||| ||||||||||| || || ||||| || || || ||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 178993 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGT 179052 || || ||||||||||| || | ||||| || | || || ||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 179053 GCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCA 179112 ||||| |||||| ||| |||||||| ||||| ||||||||||| || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 179113 TCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTT 179172 || || || |||||| | || ||||||||||||| |||||| | || | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 179173 ATCGGCATCTATGCCTATATGGG 179195 | || | || ||| ||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGG 53782 Score = 154 bits (170), Expect = 2e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 178993 GACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGT 179052 || || ||||||||||| || | ||||| || | || || ||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 179053 GCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCA 179112 ||||| |||||| ||| |||||||| ||||| ||||||||||| || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 179113 TCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTT 179172 || || || |||||| | || ||||||||||||| |||||| | || | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 179173 ATCGGCATCTATGCCTATATGGG 179195 | || | || ||| ||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGG 140421 Score = 129 bits (142), Expect = 7e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 179197 CGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCT 179256 |||||||||||| | |||| |||| |||||||||||||||||||| ||| || ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 179257 GCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 179316 || ||||| ||||| || || |||||| | || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 179317 TCTGATGCTATGCCTCTTGGT 179337 ||||| | ||||||| | ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 129 bits (142), Expect = 7e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 179197 CGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCT 179256 |||||||||||| | |||| |||| |||||||||||||||||||| ||| || ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 179257 GCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTC 179316 || ||||| ||||| || || |||||| | || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 179317 TCTGATGCTATGCCTCTTGGT 179337 ||||| | ||||||| | ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 18906 ATGGGGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCA 18965 ||||| |||||| ||| ||||||||||| || ||||||||| |||||| | |||||| Sbjct 82662 ATGGGATTGTAGTTCAATTGGTTAGAGCACCGCCCTGTCACGGCGGAAGTTGCGGGTTCG 82603 Query 18966 AGTCCCATCAATCCCG 18981 |||||| ||||||||| Sbjct 82602 AGTCCCGTCAATCCCG 82587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610317713831040