Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1546 102 1e-16 >seq1546 Length=2252224 Score = 102 bits (112), Expect = 1e-16 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| | |||||||||||| || || |||||||| || | || || | ||||| || Sbjct 2099832 AACAGCATGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAG 2099891 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCC 39726 || ||||| || ||||| || || ||||| |||||||| || |||| |||| || || || Sbjct 2099892 AAGGTGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAACGAGCC 2099950 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 || ||||| ||||| || || || || || || || || | ||| Sbjct 2099951 GGAGAAGAAAATGCCCTCCACGGCCGCGAAGGCCACCAGGCGCTC 2099995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686895422451120