Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq1501 125 2e-23 seq1546 89.7 2e-12 >seq1501 Length=566706 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 256112 GAACTGCGCAACCAGATCGAGGAGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATG 256171 || |||||||||| |||| | ||||||| |||||||||||| | |||| |||||| Sbjct 385617 GAGCTGCGCAACCGCATCGCGCAGCACGGCGTGCGCAACTCGCTGCTGGTGGCACCCATG 385676 Query 256172 CCAACCGCCAGCACCGCTCAAATCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACC 256231 || |||||| |||| | || |||||||| ||| || || | || ||| || | Sbjct 385677 CCCACCGCCTCCACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACCTCG 385736 Query 256232 AACTTCTTCTCGCGCCGCGTTCGCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTG 256291 ||| ||| | ||||||||| | |||||||||||| ||||||| |||||| || || || Sbjct 385737 AACATCTACGTGCGCCGCGTGCTGTCCGGCGAGTTCACCGTGGTCAACCAGCACCTGCTG 385796 Query 256292 GACGACTTG 256300 ||||| || Sbjct 385797 CACGACCTG 385805 >seq1546 Length=2252224 Score = 89.7 bits (98), Expect = 2e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 ||||||||||||| | || ||||| || || |||| ||| || ||||| ||||| || Sbjct 2099939 CTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCT 2099880 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTG 443861 ||||| || |||||||| |||| |||||||||||||| Sbjct 2099879 CATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTG 2099841 Score = 84.2 bits (92), Expect = 7e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 443763 CTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACT 443822 |||||||||||||||||| ||||| | || |||| || ||| |||| |||| || Sbjct 1079539 CTCCATCTTCTGGTTGAAGAAGCGCTGCCTGATGCCGGGGCTGTCCTTCTCCAACGTGCT 1079598 Query 443823 GATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTG 443861 ||||| ||||||||||| |||| ||||||||||| || Sbjct 1079599 CATCAGCCGGGACGAGGGCCTGCACTGCGACTTCGCGTG 1079637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588304293835310