Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1546 86.0 8e-12 >seq1546 Length=2252224 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||| || || | || |||||| | || || ||||| || | Sbjct 1079623 GTGCAGGCCCTCGTCCCGGCTGATGAGCACGTTGGAGAAGGACAGCCCCGGCATCAGGCA 1079564 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||||||||| | || | |||||| || ||||||||| ||| |||||||| || Sbjct 1079563 GCGCTTCTTCAACCAGAAGATGGAGCAGAAGGAGCCGGAGAAGTGGATGCCCTCCACGCA 1079504 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAA 122816 || || | | ||||| || ||||| Sbjct 1079503 GGCGAAGCCCACCAGGCGCTCCGCGAA 1079477 Score = 86.0 bits (94), Expect = 8e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||| || || || || |||||| || || |||||||| || Sbjct 2099855 GTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 2099914 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | |||||| || ||||||||||| || |||||||| Sbjct 2099915 GCGCTTCTTGAGCCAGAAGATGGAGCAGAACGAGCCGGAGAAGAAAATGCCCTCCACGGC 2099974 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAA 122816 ||| || || | ||||| || | ||| Sbjct 2099975 CGCGAAGGCCACCAGGCGCTCCGAGAA 2100001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628019769076800