Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1501 109 7e-19 seq1546 104 3e-17 seq1525 87.8 2e-12 seq736 84.2 3e-11 >seq1501 Length=566706 Score = 109 bits (120), Expect = 7e-19 Identities = 281/425 (66%), Gaps = 5/425 (1%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| || |||||||| |||| |||||| || | |||| |||| | Sbjct 386086 CGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAGGTC 386027 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | | | || |||||| | ||| | || ||| || || ||| || Sbjct 386026 AGCTTGCCAAAGTTGGGGTCGGGCATGAACACGTTGAAGCTCTGGCTCTGGTCAATGTAG 385967 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCA-CATCCTTCATCTTGATTTCCCACACAGTCCT 118015 || || || || ||||| || | || | | | | |||||| |||||||| ||| | Sbjct 385966 GCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCG-CTGCTTGATCTCCCACACCGTCTT 385908 Query 118016 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTT 118075 ||| || ||| | || || ||||| |||| | | | ||| || |||| Sbjct 385907 GTACAGCCCCTTGAGCTCCTCGGGGATCTCCAGC---TCCAGCACGGAGCCGTTCGCCGC 385851 Query 118076 GACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 118135 |||| | ||||| || ||||||| || || || || || | || || Sbjct 385850 CACCAGCTCGTTCTTCAGGTCGGCGGACCAGATGCCCATGCGGTTCAGGTCGTGCAGCAG 385791 Query 118136 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 118195 |||| ||||| || ||||| || | || ||| | || ||||| || | || Sbjct 385790 GTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTCGAGGT 385731 Query 118196 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 118255 ||| |||||||||||||| ||||| |||| ||| || | |||||||| ||||||||||| Sbjct 385730 GTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGTGGGCATGGG 385671 Query 118256 TGCCA 118260 ||||| Sbjct 385670 TGCCA 385666 >seq1546 Length=2252224 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || |||||||| ||| |||||| | || |||||| |||| || ||||| || | Sbjct 1079623 GTGCAGGCCCTCGTCCCGGCTGATGAGCACGTTGGAGAAGGACAGCCCCGGCATCAGGCA 1079564 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||||||||||||||| || | || || ||||| |||||| ||| |||||||| || Sbjct 1079563 GCGCTTCTTCAACCAGAAGATGGAGCAGAAGGAGCCGGAGAAGTGGATGCCCTCCACGCA 1079504 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| | | || ||||| || || Sbjct 1079503 GGCGAAGCCCACCAGGCGCTCCGCGAA 1079477 >seq1525 Length=1279724 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || || ||||| || ||||| || |||||| ||| || || ||| |||||| || || Sbjct 79700 CGGTCGAAGCGGCCGGGGCGCAGCAGGGCGGGGTCCAGAATGTCAGCGCGGTTGGTGGCG 79641 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 |||||||| | |||||| || | | || ||||||||||||||||||| | || || Sbjct 79640 GCGATGACGATGATGCCGGTGTTGCCCTCGAAGCCATCCATCTCAGTCAGCATCTGGTTC 79581 Query 14183 ATGGTTTGTTCGCGTTCATCATT 14205 | || || ||||| || || || Sbjct 79580 AGAGTCTGCTCGCGCTCGTCGTT 79558 >seq736 Length=4093 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || ||||| |||||||| | | || || ||| || || ||| ||||| || ||| Sbjct 3673 CGGTCAAATCGACCTGGTCTCAACAGTGCTGGGTCGAGAATTTCAGGCCGGTTGGTGGCC 3732 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 || |||| | || |||| | | |||||||||||||||||||| || | ||| || Sbjct 3733 GCCATGATGATGACGCCCTTGTTAGTATCAAAGCCATCCATCTCAACCAGTAATTGGTTC 3792 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACC---CGCACTGCGTTGCTTACCG 14239 | ||| |||||||||||||| || | | || | || |||| | || ||| || Sbjct 3793 AGGGTCTGTTCGCGTTCATCGTTACCGGTCACTGCTCCGAGGGCAC-GAGT--CTTGCCC 3849 Query 14240 ACGGCGTCAATTTCATCGATGAAAACGATACATGGT 14275 | ||||| | ||| |||||||| | ||| || ||| Sbjct 3850 AGCGCGTCCAGTTCGTCGATGAAGATGATGCACGGT 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618423155974480