Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1546 105 8e-18 >seq1546 Length=2252224 Score = 105 bits (116), Expect = 8e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || || ||| || ||||| || |||||||| || || |||||| | Sbjct 2099995 GAGCGCCTGGTGGCCTTCGCGGCCGTGGAGGGCATTTTCTTCTCCGGCTCGTTCTGCTCC 2099936 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || | |||||||||||||| || |||||||| || ||| ||||||||||||||| ||| Sbjct 2099935 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATC 2099876 Query 94924 TCTCGTGACGAGGGACTCCAC 94944 || |||||||| || ||| Sbjct 2099875 AGCCGCGACGAGGGCCTGCAC 2099855 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/284 (68%), Gaps = 12/284 (4%) Strand=Plus/Minus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 || || || |||||||| |||| || ||||| || || || || || || || || | Sbjct 1467257 TCGAAGCCGTCCATCTCCGTCAGCAGCTGGTTGATGGTCTGCTCGCGCTCGTCGTTGCC- 1467199 Query 9671 GGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 || ||| ||||| | ||| || |||||||| || |||||||||||||||| || Sbjct 1467198 -GCCGCCCATGCCAGCGCCGCGCTGGCGGCCCACGGCGTCGATCTCATCAATGAAGATGA 1467140 Query 9729 TGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 9784 |||| || ||| || || | || || || || || |||||| ||| ||| Sbjct 1467139 TGCAGGGCGCCTTGGACTTGGCCTTC----TCGAACAGGTCGCGCACACGCGAGGCACCC 1467084 Query 9785 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 9844 || || || |||| |||||| || | | ||||| || || ||||||| | Sbjct 1467083 ACGCCCACGAACACCTCCACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGGGTGCCGGCC 1467024 Query 9845 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| || | ||| ||| || || |||||||| ||||| || Sbjct 1467023 TCACCGGCCACGGCCTTGGCCAGCAGGGTCTTACCGGTACCGGG 1466980 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || ||||| || | | || || || || ||||| ||| |||||| || |||||| Sbjct 1079477 TTCGCGGAGCGCCTGGTGGGCTTCGCCTGCGTGGAGGGCATCCACTTCTCCGGCTCCTTC 1079536 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||| | || | ||| | |||||||| | || ||||| || || | ||||||||||| | Sbjct 1079537 TGCTCCATCTTCTGGTTGAAGAAGCGCTGCCTGATGCCGGGGCTGTCCTTCTCCAACGTG 1079596 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 || ||| || |||||||| || ||| Sbjct 1079597 CTCATCAGCCGGGACGAGGGCCTGCAC 1079623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583249440995920