Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1501 306 4e-78 seq1546 122 1e-22 >seq1501 Length=566706 Score = 306 bits (338), Expect = 4e-78 Identities = 589/861 (68%), Gaps = 31/861 (4%) Strand=Plus/Plus Query 19978 CTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCG 20037 || ||||||||| | || || ||| ||||| | | || || || || ||||| Sbjct 385238 CTTCTTCGACTTCGAGAAGCTGGCTGAGATGACCAAGATGGTGACCCGCAACCTGAACAA 385297 Query 20038 CGTCATCGATCGGAACTTTTACCCGA---CCGAGGCGGCGCGCAAGTCGAATATGCGCCA 20094 |||| || |||| |||||| || ||||| |||| || || |||||||| Sbjct 385298 GATCATTGACGTCAACTACTACCCGCACCCCAAGGCGCAGCGC---TCCAACATGCGCCA 385354 Query 20095 CCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTC 20154 ||| || |||| | ||||| ||||||||||| ||| ||||| |||| ||| | | Sbjct 385355 CCGCCCCATCGGCCTGGGCGTGCAGGGCCTGGCGGACACCTTCATCCTGCTGGGCATGGC 385414 Query 20155 ATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGC 20214 |||||| ||| |||| |||||| ||| |||||||||| ||| |||||||| Sbjct 385415 CTTCGACTCGCCCGAGGCCGCCGAGCTGAACCGCCAGATCTTCGAGGTCGTCTACCACGC 385474 Query 20215 GGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGG 20274 || ||| |||||||| || || | |||||||| |||||||| | | || Sbjct 385475 TGCGCTCAGCACCTCGTGCGAGCTGGCGGAGCGTGACGGCCCCTACGAGACCTACGCCGG 385534 Query 20275 GTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTT 20334 ||||| | ||| |||| |||| ||||| |||||||||||||||| | | | Sbjct 385535 CTCGCCAGTGTCGCAGGGCGTCCTGCAGCCCGACATGTGGGGCGTCAAGCCCACCG-GCG 385593 Query 20335 TTGGAGCGCCCT-CAA---GGTTGAGAT---CAAGACC---------CACGGGCTTCGCA 20378 ||| | | || ||| || ||| | ||| | ||||| | |||| Sbjct 385594 TTGACGGCCGCTGCAACTGGGAGGAGCTGCGCAACCGCATCGCGCAGCACGGCGTGCGCA 385653 Query 20379 ACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACG 20438 ||||| |||| || || |||||||| |||||||| ||| | |||||| |||| ||||||| Sbjct 385654 ACTCGCTGCTGGTGGCACCCATGCCCACCGCCTCCACCTCGCAGATCCTGGGCAACAACG 385713 Query 20439 AG-GCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTC 20497 || ||||| ||||| ||||| | ||||||||| |||| || ||| |||| |||||| Sbjct 385714 AGTGCTTT-GAGCCCTACACCTCGAACATCTACGTGCGCCGCGTGCTGTCCGGCGAGTTC 385772 Query 20498 GTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAA 20557 | |||| ||| |||||||| | | |||| || | || | || ||||| || | Sbjct 385773 ACCGTGGTCAACCAGCACCTGCTGCACGACCTGAACCGCATGGGCATCTGGTCCGCCGAC 385832 Query 20558 ATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGGCATTGGATATCCCCCAGAAC 20617 | ||||| || | || || ||| ||| | || |||| |||||| || | Sbjct 385833 CTGAAGAACGAGCTGGTGGCGGCGAACGGCTCCGTGCTGGAGCTGGAGATCCCCGAGGAG 385892 Query 20618 CTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCA---TCATCGACATG 20674 ||||||| | |||| ||| || ||||| ||| || || ||| | | |||||| Sbjct 385893 CTCAAGGGGCTGTACAAGACGGTGTGGGAGATCA---AGCAGCGCACGCTGGTGGACATG 385949 Query 20675 GCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAAT 20734 || ||||| |||||||||||||| |||||| |||| |||| || |||||| | Sbjct 385950 GCCGCCGACCGCGGCGCCTACATTGACCAGAGCCAGAGCTTCAACGTGTTCATGCCCGAC 386009 Query 20735 CCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACG 20794 || | | | | ||||||| ||| |||| | |||| ||||| |||||| |||||||| Sbjct 386010 CCCAACTTTGGCAAGCTGACCTCGCTGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACC 386069 Query 20795 GGCATGTACTATCTGCGGACC 20815 ||||||||||| ||||| ||| Sbjct 386070 GGCATGTACTACCTGCGCACC 386090 Score = 217 bits (240), Expect = 2e-51 Identities = 506/755 (67%), Gaps = 31/755 (4%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| ||||||||||| |||||||| ||||| ||| |||| | ||||| Sbjct 386089 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAG 386030 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTC-CATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308 | ||||||| ||| | | ||| || |||||| | ||||| |||| |||||| || Sbjct 386029 GTCAGCTTG-CCAAAGTTGGGGTCGGGCATGAACACGTTGAAGCTCTGGCTCTGGTCAAT 385971 Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGT 78368 ||| || ||||||||||| |||||||| | | || ||| |||||||| | || Sbjct 385970 GTAGGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACCGT 385911 Query 78369 CCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCTTGTACGCTCCCACCGGCTCG 78428 | ||| | |||| ||||| || |||| |||||| | | ||| || || Sbjct 385910 CTTGTACAGCCCCTTGAGCTCCTCGGGGATCTCCAGCTCCAGCACGGAGCCGTTCGCCGC 385851 Query 78429 CACAATTTCATTCTTAATTTGAGGGTTCCAG---CGATTGATCTTCTGAAGATCCCGGAC 78485 ||| | || ||||| | | | | |||| | || ||| || || | | Sbjct 385850 CACCAGCTCGTTCTTCAGGTCGGCGGACCAGATGCCCATGCGGTTC---AGGTCGTGCAG 385794 Query 78486 CAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGT 78545 ||||||| |||| | || | ||||||||||| ||| ||||||| ||||||||| | Sbjct 385793 CAGGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTCGA 385734 Query 78546 CGTGTACGGCTCGAAAGC-CTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCA 78604 ||||| ||||| ||||| ||||||||| |||| |||||| | ||| |||||||| |||| Sbjct 385733 GGTGTAGGGCTC-AAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGTGGGCA 385675 Query 78605 TGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTC---------TTG---ATCTCGA 78652 ||||||| ||||| || || || || | || ||| | ||| | ||| Sbjct 385674 TGGGTGCCACCAGCAGCGAGTTGCGCACGCCGTGCTGCGCGATGCGGTTGCGCAGCTCCT 385615 Query 78653 CC---TT---TAGGCCGTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAA 78706 || || ||||||| || | | | | || ||||||||||| || || | Sbjct 385614 CCCAGTTGCAGCGGCCGTC---AACGCCGGTGGGCTTGACGCCCCACATGTCGGGCTGCA 385558 Query 78707 GGATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGA 78766 ||| |||| ||| | ||||| || | | |||||||| | || || || || | Sbjct 385557 GGACGCCCTGCGACACTGGCGAGCCGGCGTAGGTCTCGTAGGGGCCGTCACGCTCCGCCA 385498 Query 78767 GTTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCT 78826 | ||||| || | || || |||||||| || |||||||||| ||| |||| Sbjct 385497 GCTCGCACGAGGTGCTGAGCGCAGCGTGGTAGACGACCTCGAAGATCTGGCGGTTCAGCT 385438 Query 78827 CGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCT 78886 || |||| || | |||||| | | ||| |||| |||||| || |||||||||| Sbjct 385437 CGGCGGCCTCGGGCGAGTCGAAGGCCATGCCCAGCAGGATGAAGGTGTCCGCCAGGCCCT 385378 Query 78887 GGACGCCGATAGCGATCGGTCGGTGGCGCATGTTG 78921 | ||||| | |||| || ||||||||||||||| Sbjct 385377 GCACGCCCAGGCCGATGGGGCGGTGGCGCATGTTG 385343 Score = 154 bits (170), Expect = 2e-32 Identities = 133/162 (82%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCT 79438 ||||||||| ||||| |||||||||||| |||| ||| ||||||||| ||| ||||| Sbjct 384384 CTCCATGAACAGGTCGGGGATCCACAGG-CCGTAGAACAGGTCGCGGGCGCGCGCCTCCT 384326 Query 79439 CGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCA 79498 | | ||| |||||| ||||| || || ||||| | | |||||||||||| ||||||| Sbjct 384325 CCTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCA 384266 Query 79499 GATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGT 79540 ||||||||||| | ||||||||||||||||||||||||| Sbjct 384265 TGTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGT 384224 Score = 147 bits (162), Expect = 2e-30 Identities = 138/173 (80%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 19453 CAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCC 19512 ||| || || ||||||| |||||||| ||||||||| | |||||||||||| | ||||| Sbjct 384213 CAGCTATGTGGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATGGAGCC 384272 Query 19513 ATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGAT 19572 |||||||| ||||| | || ||||| || |||||| |||||| || | |||||| Sbjct 384273 CTGGCACGCCGACGTGTTTGACTTCCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGC 384332 Query 19573 GCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624 |||| |||||||| ||| |||||| ||||||| || ||||| ||||||||| Sbjct 384333 GCGCGCCCGCGACCTGTTCTACGGCC-TGTGGATCCCCGACCTGTTCATGGAG 384384 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 |||||| || || ||||||| || || ||||||||||||| | ||||| ||||||| Sbjct 384930 CTCGATAATCTCCGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGTTGGA 384871 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||| ||| ||| ||||||||| |||||| || | |||||||| ||||| Sbjct 384870 CTTGCGGTTGCAGTGGTCCTTGTACAGCATGTAGGGGTTGCCGGTCTCCACCTG 384817 Score = 82.4 bits (90), Expect = 8e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 79691 CCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGC 79750 ||||||| || ||||||||||| || || |||||||| ||| || | ||||||||||| Sbjct 383773 CCTTGAGGGTGTCGTAGATGCCGTCAATGGAGTCGTCGCGCATGGCCAGCAGGAAGCAGC 383714 Query 79751 TCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 | || ||| ||| | || ||| ||||||| || || |||| ||||| ||||| Sbjct 383713 TGCTCAGCTGGGGGCGGGGGGTGCCGCCGTTGAACAGCGTGGGCGAGGCGTGGGTGAA 383656 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 19792 CCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAA 19851 |||||| |||||||||| || |||||| ||||||||| | ||| |||||| || Sbjct 384816 CCAGGTGGAGACCGGCAACCCCTACATGCTGTACAAGGACCACTGCAACCGCAAGTCCAA 384875 Query 19852 TCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAG 19906 ||| ||||| | ||| | ||||||| ||||||||||| || || || || ||| Sbjct 384876 CCAGCAGAACCTGGGCACCATCAAGTGCTCCAACCTGTGCACGGAGATTATCGAG 384930 >seq1546 Length=2252224 Score = 122 bits (134), Expect = 1e-22 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| || || |||||||| ||||||||||| | || ||||||||||| ||||| || Sbjct 2099972 CGTGGAGGGCATTTTCTTCTCCGGCTCGTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGG 2099913 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||||||| ||||| | |||||||||||||| || ||| ||||||||||| || Sbjct 2099912 CCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCA 2099856 Score = 104 bits (114), Expect = 3e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 59931 AAAGCAGAATGGGCCATGCAGTGGATGAG-TCCTGGAGCATCATTTGCACAACGTCTCAT 59989 || || || |||||||||| ||||| || |||| | | | || || | || || | Sbjct 1079435 AAGGCGGAGTGGGCCATGCGCTGGATCAGCTCCTCCAACGTG-TTCGCGGAGCGCCTGGT 1079493 Query 59990 AGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 | || || |||||||| || ||| |||||| ||||| ||||| | || |||||| | Sbjct 1079494 GGGCTTCGCCTGCGTGGAGGGCATCCACTTCTCCGGCTCCTTCTGCTCCATCTTCTGGTT 1079553 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||||| |||| |||||||| ||| |||||||||| ||| || ||||||||| Sbjct 1079554 GAAGAAGCGCTGCCTGATGCCGGGGCTGTCCTTCTCCAACGTGCTCATCAGCCGGGACGA 1079613 Query 60110 GGGCCTCCA 60118 |||||| || Sbjct 1079614 GGGCCTGCA 1079622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548514117479520