Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1501 181 1e-40 >seq1501 Length=566706 Score = 181 bits (200), Expect = 1e-40 Identities = 552/831 (66%), Gaps = 54/831 (6%) Strand=Plus/Plus Query 55130 GTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGA---CTGAAGCGGCG 55186 ||||| || ||||||||| | |||| ||| || ||||||||| | | ||| | Sbjct 385278 GTGACCCGCAACCTGAACAAGATCATTGACGTCAACTACTACCCGCACCCCAAGGCGCAG 385337 Query 55187 CGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATC 55246 ||| |||||| | || ||||| ||||||| | | || || |||||| |||| |||| | Sbjct 385338 CGC---TCCAACATGCGCCACCGCCCCATCGGCCTGGGCGTGCAGGGCCTGGCGGACACC 385394 Query 55247 TTCATGATGCTCGGATTGCCCTTCGACTCG---GAACCTGCTCGAGAAATTAACCAGGAC 55303 ||||| |||| || || ||||||||||| || | || |||| | |||| | Sbjct 385395 TTCATCCTGCTGGGCATGGCCTTCGACTCGCCCGAGGCCGC-CGAGC--TGAACCGCCAG 385451 Query 55304 ATCTTCA--GTCGCATCTACTTTGCAGCGCTCGAGGAG-TCGTGTCATCTGGCTATGAGC 55360 |||||| |||| ||||| || |||||| || | ||||| | ||||| | | Sbjct 385452 ATCTTCGAGGTCG--TCTACCACGCTGCGCTC-AGCACCTCGTGCGAGCTGGCGGAGCGT 385508 Query 55361 GAGGGGACCTACGAGACGTTCCGTGATTCGCCAGCTGACA-AGGGACTTCTCCAGTTCGA 55419 || || |||||||||| | | | ||||||| || | |||| | || ||| ||| Sbjct 385509 GACGGCCCCTACGAGACCTACGCCGGCTCGCCAG-TGTCGCAGGGCGTCCTGCAGCCCGA 385567 Query 55420 TCTATGGGGCAAGTCTGACCCCATGT--TTGAC---------AAGTTGAAGCA--TGA-C 55465 | |||||| ||| ||| | ||||| || | | || | || | Sbjct 385568 CATGTGGGGC--GTCAAGCCCACCGGCGTTGACGGCCGCTGCAACTGGGAGGAGCTGCGC 385625 Query 55466 ATTCACTTGTGG------GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCG 55519 | | | | | ||| | |||||||| ||||| ||||| || ||||| ||||| Sbjct 385626 AACCGCATCGCGCAGCACGGCGTGCGCAACTCGCTGCTGGTGGCACCCATGCCCACCGCC 385685 Query 55520 TCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 || || | |||||| |||||||||||||| || ||||| ||||| | ||||||||| Sbjct 385686 TCCACCTCGCAGATCCTGGGCAACAACGAGTGCTTTGAGCCCTACACCTCGAACATCTAC 385745 Query 55580 CTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||||| || | || ||||| | || ||||| ||||||| | | |||||| Sbjct 385746 GTGCGCCGCGTGCTGTCCGGCGAGTTCACCGTGGTCAACCAGCACCTGCTGCACGACCTG 385805 Query 55640 CAGAAGATCAACAAGTGGAACCCGCAGA--TCAAGACGGATATTGT-GCG--GAACGGGG 55694 | || || ||| |||| || | |||| || | || ||| |||| | Sbjct 385806 AACCGCATGGGCATCTGG--TCCGCCGACCTGAAGAACGAGCTGGTGGCGGCGAAC---G 385860 Query 55695 GGTCCGTCCAGAATCTGGAGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGG 55754 | ||||| | | | |||||||| || | ||||||| | | ||| ||||||||||| Sbjct 385861 GCTCCGTGCTGGAGCTGGAGATCCCCGAGGAGCTCAAGGGGCTGTACAAGACGGTGTGGG 385920 Query 55755 AGATTCCACAGAAGAGTCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGT 55814 |||| ||| | ||| | |||||| || || || || || ||||| |||||| Sbjct 385921 AGATCAAGCAGCGCACGCTGGTGGACATGGCCGCCGACCGCGGCGCCTACATTGACCAGA 385980 Query 55815 CCCAGTCTCTGAACATCTTCATG-GAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCAC 55873 |||| | ||| | |||||| || || | ||| |||| ||| |||| ||||| Sbjct 385981 GCCAGAGCTTCAACGTGTTCATGCCCGACCCCAACTTTGG-CAAGCTGACCTCGCTGCAC 386039 Query 55874 TTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 || |||| ||| ||||| |||||||| || |||||||| ||||| ||| Sbjct 386040 TTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACCTGCGCACC 386090 Score = 113 bits (124), Expect = 5e-20 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 ||||||| || || ||||||||||| | |||||||||||| | ||||| |||||||||| Sbjct 384224 ACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATGGAGCCCTGGCACGCCG 384283 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660 || | | || || || || ||||| ||| || || | || ||| |||| ||| | Sbjct 384284 ACGTGTTTGACTTCCTGGACCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGCGCCCGCG 384343 Query 53661 ACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 ||||||| ||| || |||||||| || ||||| |||||| Sbjct 384344 ACCTGTTCTACGGC-CTGTGGATCCCCGACCTGTTCATG 384381 Score = 87.8 bits (96), Expect = 2e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 53273 TTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGC 53332 || || |||||| |||| || |||||||||| || || | ||| ||| || ||| Sbjct 383656 TTCACCCACGCCTCGCCCACGCTGTTCAACGGCGGCACCCCCCGCCCCCAGCTGAGCAGC 383715 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGG 53390 ||||||||| |||| ||| || ||||| || |||||||||||||| || ||||||| Sbjct 383716 TGCTTCCTGCTGGCCATGCGCGACGACTCCATTGACGGCATCTACGACACCCTCAAGG 383773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547205342968400