Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1501 185 1e-41 seq1505 111 2e-19 seq1546 100 3e-16 seq1535 91.5 2e-13 seq1491 89.7 6e-13 >seq1501 Length=566706 Score = 185 bits (204), Expect = 1e-41 Identities = 556/852 (65%), Gaps = 20/852 (2%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| ||||||||||| |||||||||||||| |||| |||| | ||||| || Sbjct 386089 GTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGCGAG 386030 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 | ||||| ||| |||||| |||||| | ||| | ||| ||| ||| Sbjct 386029 GTCAGCTTGCCAAAGTTGGGGTCGGGCATGAACACGTTGAAGCTCTGGCTCTGGTCAATG 385970 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 | || || || || || ||||| || | | | || || ||||| || || Sbjct 385969 TAGGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACCGTC 385910 Query 80218 CGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGATTTTGCACACTGCCACCGTCC 80274 |||| |||| |||||||| || || ||||| | |||| ||| || Sbjct 385909 TTGTACAGCCCCTTG---AGCTCCTCGGGGATCTCCAGCTCCAGCACGGAGCCGTTCGCC 385853 Query 80275 TTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACA 80334 || | | || |||| || | | ||||| || | || ||| || | || Sbjct 385852 GCCACCAGCTCGTTCTTCAGGTCGGCGGACCAGATGCCCATGCGGTTCAGGTCGTGCAGC 385793 Query 80335 AGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTA 80394 ||||||| ||| | || | ||||| || | || ||| |||| || | ||| | Sbjct 385792 AGGTGCTGGTTGACCACGGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTCGAG 385733 Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| |||||||| ||||||||| || |||||||| | ||| || || ||||| Sbjct 385732 GTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGAGGCGGTGGGCATG 385673 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGAC 80514 || | |||| ||| || || |||| |||||||| | ||| | ||||| || | Sbjct 385672 GGTGCCACCAGCAGCGAGTTGCGCACGCCGTGCTGCGCGATGCGGTTGCGCAGCTCCTCC 385613 Query 80515 CAAAA--ATCAACCC-CAACGCTG-------TGAC--CCCACATGTCGTGCTGCAAGATG 80562 || | | || |||||| | |||| ||||||||||| |||||| || | Sbjct 385612 CAGTTGCAGCGGCCGTCAACGCCGGTGGGCTTGACGCCCCACATGTCGGGCTGCAGGACG 385553 Query 80563 CCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCA 80622 |||| |||| | || || || ||| | |||||||| ||||| || || |||||||| Sbjct 385552 CCCTGCGACACTGGCGAGCCGGCGTAGGTCTCGTAGGGGCCGTCACGCTCCGCCAGCTCG 385493 Query 80623 CACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA-CACCGCG 80681 ||||| | || || ||||| || | | ||| |||| ||||| | | ||| Sbjct 385492 CACGAGGTGCTGAGCGCAGCGTGGTAGACGACCTCGAAGATCTGGCGGTTCAGCTCGGCG 385433 Query 80682 CGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAAC 80741 |||| || |||||| | || ||||| || ||||| ||| ||||||||||| || Sbjct 385432 -GCCTCGGGCGAGTCGAAGGCCATGCCCAGCAGGATGAAGGTGTCCGCCAGGCCCTGCAC 385374 Query 80742 GCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAA 80801 ||| | | |||| |||||||||||| |||| || |||| |||| || ||||| | Sbjct 385373 GCCCAGGCCGATGGGGCGGTGGCGCATGTTGGAGCGCTGCGCCTTGGGGTGCGGGTAGTA 385314 Query 80802 GTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTT 80861 ||| || |||| |||||||||||| || || | | || | ||| || || Sbjct 385313 GTTGACGTCAATGATCTTGTTCAGGTTGCGGGTCACCATCTTGGTCATCTCAGCCAGCTT 385254 Query 80862 CTGAAAGTCGAA 80873 || |||||||| Sbjct 385253 CTCGAAGTCGAA 385242 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 81230 CCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCT 81289 ||| |||||| ||| |||||||| ||| || ||||||||||||| ||||||||||| Sbjct 384385 CCTCCATGAACAGGTCGGGGATCCACAGGCCGTAGAACAGGTCGCGGGCGCGCGCCTCCT 384326 Query 81290 CATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCA 81349 | | || ||||| ||||| || || ||||| | | ||| || ||||| ||||||| Sbjct 384325 CCTTGCCGTGGTTCTTGCGCAGGTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCA 384266 Query 81350 GATACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGT 81388 || | ||||| | |||||||| | ||| ||||||| Sbjct 384265 TGTAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGT 384224 >seq1505 Length=619805 Score = 111 bits (122), Expect = 2e-19 Identities = 178/254 (70%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGG--C 32111 ||||||| |||||||| | ||||||||| ||||| | ||||| ||||||||||||| Sbjct 185057 AGGTGGCCCAGCTGTCCGCCTACGTGGCCGAGCACAGCGCCTACCACCACGGCGAGGGCA 184998 Query 32112 GTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAA 32171 | | ||| ||||||| |||||||| || ||| |||| || || || ||| | || Sbjct 184997 GCCTGGCCA--GCACCATCGTCAACCTGGCGCAGGACTTCGTGGGCAGCAACAACGTCAA 184940 Query 32172 CTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAG 32231 | | || | || || ||||| || || ||||| || |||||||| || || || Sbjct 184939 CCTGCTGCACCCCAGCGGTCAGTTCGGCACGCGGCTGCAGGGCGGCAAGGACGCCGCCAG 184880 Query 32232 CTCCCGTTACATCTTCACCCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291 | | || ||||||| ||| || || || | ||||||| | | ||| || | || Sbjct 184879 CGCGCGCTACATCTACACGCGGCTGGCGGCGCTGACGCGCCACCTGTTCAACGAGAACGA 184820 Query 32292 CGATGCGGTGCTCA 32305 |||| | |||||| Sbjct 184819 CGATCAGCTGCTCA 184806 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || || || ||||| || || || ||||| ||||| Sbjct 503288 ATGCAAATCTTCGTGAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTGGAGTCTTCG 503229 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| ||||||| || ||||||||||||||||| Sbjct 503228 GACACCATCGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGG 503185 >seq1546 Length=2252224 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 64661 CTAAAAAGGCTGAATGGGCCATCCGGTGGATGAA-TCGTGGGTCGTCGTTTGGTCAGCGT 64719 |||| ||||| || |||||||| || ||||| | || | ||| ||| | |||| Sbjct 1079430 CTAAGAAGGCGGAGTGGGCCATGCGCTGGATCAGCTCCTCCAACGT-GTTCGCGGAGCGC 1079488 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | | || ||||| ||||| || || ||| || || || ||||| || || ||| Sbjct 1079489 CTGGTGGGCTTCGCCTGCGTGGAGGGCATCCACTTCTCCGGCTCCTTCTGCTCCATCTTC 1079548 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||| | || ||||| |||||||||| || ||||| || || |||| ||| ||| ||| Sbjct 1079549 TGGTTGAAGAAGCGCTGCCTGATGCCGGGGCTGTCCTTCTCCAACGTGCTCATCAGCCGG 1079608 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGAC 64893 |||||||| || ||| || || ||| ||||| | ||||||||| || Sbjct 1079609 GACGAGGGCCTGCACTGCGACTTCGCGTGCTGCCTGTACTCGCACCTCAAGAAC 1079662 >seq1535 Length=1731330 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || |||||||||||||| ||||| || || ||||| || ||||| | || Sbjct 1340588 GGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCGGGCAAGCAGCTGGAGGACGGCCGC 1340529 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || || Sbjct 1340528 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCT--GC 1340471 Query 27628 GGTG 27631 |||| Sbjct 1340470 GGTG 1340467 >seq1491 Length=442363 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| Sbjct 109834 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACGCTCGAGGTGGAGTCTTCG 109893 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| || ||||||| || ||||||||||||||||| Sbjct 109894 GACACCATTGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGG 109937 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 109708 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 109767 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| || || || || || || |||| || ||| Sbjct 109768 ACCCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 109827 Query 27628 GGTGG 27632 ||||| Sbjct 109828 GGTGG 109832 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || || || || || ||||| || ||||| | || Sbjct 110091 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 110150 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| || || || || || || |||| || ||| Sbjct 110151 ACCCTGGCTGACTACAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTGCGCCTGCGC 110210 Query 27628 GGTGGACA 27635 ||||| || Sbjct 110211 GGTGGCCA 110218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570299293204960