Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq1558 194 2e-44 >seq1558 Length=203828 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649 || || ||||| |||||||| ||| | |||||||||||||| |||||||| || |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 176650 CCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCAC 176709 |||||||| ||| | || || || ||||| || ||||| || | |||||||| |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 176710 GGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTAC 176769 || | | |||||||| || | | | || ||||| |||||||||||| ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACA 176819 |||||| ||||| ||||||||||| || ||||||||||||||||| || Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 194 bits (214), Expect = 2e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 176590 ATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCAC 176649 || || ||||| |||||||| ||| | |||||||||||||| |||||||| || |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 176650 CCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCAC 176709 |||||||| ||| | || || || ||||| || ||||| || | |||||||| |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 176710 GGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTAC 176769 || | | |||||||| || | | | || ||||| |||||||||||| ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 176770 GGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACA 176819 |||||| ||||| ||||||||||| || ||||||||||||||||| || Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 187 bits (206), Expect = 3e-42 Identities = 207/276 (75%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 176821 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCAC 176880 ||||||||||||||||| |||||||| || ||||||||||| ||||| | | ||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 176881 TTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACA 176940 |||||| | || || | || || | | || ||||| ||||| | ||| | | || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 176941 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAA 177000 |||||||||||| | |||||||||||||||||||| || || ||||| ||| Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 48898 Query 177001 GTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCAC 177060 || | || |||| ||| ||| | |||||||| ||| | ||||||||||| |||||| Sbjct 48897 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 48838 Query 177061 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 177096 |||||||| |||||||||||||| || ||| | ||| Sbjct 48837 GAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 187 bits (206), Expect = 3e-42 Identities = 207/276 (75%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 176821 GGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCAC 176880 ||||||||||||||||| |||||||| || ||||||||||| ||||| | | ||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 176881 TTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACA 176940 |||||| | || || | || || | | || ||||| ||||| | ||| | | || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 176941 ATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAA 177000 |||||||||||| | |||||||||||||||||||| || || ||||| ||| Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 145305 Query 177001 GTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCAC 177060 || | || |||| ||| ||| | |||||||| ||| | ||||||||||| |||||| Sbjct 145306 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 145365 Query 177061 GAGCGTAATGCTCACAACTTCCCACTTGACCTTGCT 177096 |||||||| |||||||||||||| || ||| | ||| Sbjct 145366 GAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 145 bits (160), Expect = 9e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 176245 GACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGA 176304 || ||||| || |||||||| |||| ||||| || || || ||||||||||| |||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 176305 GCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCA 176364 || || |||||| || ||||||||||| || |||||||||||||| |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 176365 ACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTT 176424 | | ||||| ||| | ||||| || || || |||||||| | || | ||||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 176425 ATCGGTATCT-CAGCTTACATGGG 176447 | ||| | | | || |||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGG 53782 Score = 145 bits (160), Expect = 9e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 176245 GACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGA 176304 || ||||| || |||||||| |||| ||||| || || || ||||||||||| |||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 176305 GCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCA 176364 || || |||||| || ||||||||||| || |||||||||||||| |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 176365 ACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTT 176424 | | ||||| ||| | ||||| || || || |||||||| | || | ||||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 176425 ATCGGTATCT-CAGCTTACATGGG 176447 | ||| | | | || |||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGG 140421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603482646946560