Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1491 89.7 1e-12 seq1535 87.8 4e-12 seq1505 86.0 1e-11 >seq1491 Length=442363 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || ||||| | || || Sbjct 109817 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 109758 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| |||||||| ||||| || ||||| || || Sbjct 109757 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 109714 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || ||||| | || || Sbjct 110200 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCGTCC 110141 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 |||||||||||||| |||||||| ||||| || ||||| || || Sbjct 110140 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 110097 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||| ||||| |||||||| || |||||||| || || |||||| Sbjct 109937 CCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCCGAAGACTCCACCTCG 109878 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| ||||| || ||||| || || | |||||| Sbjct 109877 AGCGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 109834 >seq1535 Length=1731330 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | || || Sbjct 1340479 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCC 1340538 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||||||||| ||||| || || || || ||||| || |||| Sbjct 1340539 TCCAGCTGCTTGCCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAA 1340584 >seq1505 Length=619805 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/111 (77%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 211006 GAACTC--CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTC 211063 |||||| | ||||||||||| ||||| ||||| || ||||||||||| || || Sbjct 503178 GAACTCACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTC 503237 Query 211064 AACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| ||||| |||||||| ||||| || || | ||||| Sbjct 503238 CACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAGATTTGCAT 503288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159128861152670