Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1558 551 7e-152 >seq1558 Length=203828 Score = 551 bits (610), Expect = 7e-152 Identities = 737/1025 (72%), Gaps = 0/1025 (0%) Strand=Plus/Minus Query 185957 ATGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTC 186016 ||||||||||| | |||||||||||| | ||||| || || || || || ||||| Sbjct 175594 ATGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 175535 Query 186017 TGGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAAC 186076 || ||| | || || || |||||| | ||| | ||||| ||| | ||||| || || Sbjct 175534 AGGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTAC 175475 Query 186077 GTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTT 186136 || ||||| |||||||| || || || || |||||||| | || ||| ||| || Sbjct 175474 TTTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 175415 Query 186137 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 186196 | || ||||| || || || |||||| || ||||| ||| |||||||| | |||| Sbjct 175414 CTTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTG 175355 Query 186197 GGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTT 186256 |||||| || ||||||| ||| ||| || |||| |||||||| || | ||| || Sbjct 175354 GGGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATT 175295 Query 186257 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAG 186316 || || | ||||| || |||| | | || ||||||||||| || ||||||||||| Sbjct 175294 CGTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 175235 Query 186317 TCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTT 186376 |||| ||| | ||||||||||| || |||||||| || | || || ||||| || Sbjct 175234 TCGTTCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATT 175175 Query 186377 TGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTT 186436 ||| |||||||| || ||||| | || || || |||||||| || || || Sbjct 175174 CGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTT 175115 Query 186437 TGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTT 186496 || || || || ||||| | ||| | || ||| ||||||| |||||||||||||| | Sbjct 175114 CGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACT 175055 Query 186497 GAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAAT 186556 || |||||||||||||||||||| || ||| | | |||| |||| | | | || || Sbjct 175054 TAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 174995 Query 186557 CCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAA 186616 || |||| |||||| ||||| || | | ||||| || || || ||||||||| Sbjct 174994 TCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCG 174935 Query 186617 AGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTG 186676 |||||| | | || || | |||||||| || || ||||| ||||| ||| | ||||| Sbjct 174934 TGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTG 174875 Query 186677 GTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTT 186736 |||||| |||||||| |||| || || || ||||||||||| ||||||||| | || Sbjct 174874 GTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATT 174815 Query 186737 TGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCT 186796 ||||| || | |||||||||| | | ||||| || | ||| | ||||| ||| | Sbjct 174814 AGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACTT 174755 Query 186797 TCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGAC 186856 |||||||| ||||| ||| || ||| | | || || || || ||||| ||||| || Sbjct 174754 ACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAAC 174695 Query 186857 GTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGA 186916 ||||| || || || || || | || |||||| | ||||| |||||||| | || Sbjct 174694 ATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 174635 Query 186917 TCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCTGTG 186976 |||||||| ||| || ||||| ||||||||||| || ||| | || |||||||| | Sbjct 174634 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATA 174575 Query 186977 ATATA 186981 ||||| Sbjct 174574 ATATA 174570 Score = 248 bits (274), Expect = 1e-60 Identities = 224/279 (80%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 183902 ATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTC 183961 |||| |||||||||||||| |||||||| || ||||| || ||||| |||||||| | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 183962 ACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCA 184021 |||||||| | ||||||||||| || |||| || ||||| |||||| | ||| ||| || Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCA 48961 Query 184022 -CTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGT 184080 |||||||||| ||| | || ||||| ||||||||||| || | | || |||||| Sbjct 48960 ACTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGT 48901 Query 184081 CGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATG 184140 ||||| || ||||| ||||||||| | ||||||||||| | || |||||||| ||| Sbjct 48900 CGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 48841 Query 184141 CACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 184179 ||||||||||| ||||||||||||||||| ||| | ||| Sbjct 48840 CACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 248 bits (274), Expect = 1e-60 Identities = 224/279 (80%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 183902 ATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTC 183961 |||| |||||||||||||| |||||||| || ||||| || ||||| |||||||| | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 183962 ACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGC- 184020 |||||||| | ||||||||||| || |||| || ||||| |||||| | ||| ||| | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCA 145242 Query 184021 ACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGT 184080 ||||||||||| ||| | || ||||| ||||||||||| || | | || |||||| Sbjct 145243 ACTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGT 145302 Query 184081 CGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATG 184140 ||||| || ||||| ||||||||| | ||||||||||| | || |||||||| ||| Sbjct 145303 CGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 145362 Query 184141 CACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 184179 ||||||||||| ||||||||||||||||| ||| | ||| Sbjct 145363 CACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 196 bits (216), Expect = 6e-45 Identities = 179/226 (79%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 183678 TGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 183737 ||| || || |||| ||| | || ||||||||||| ||||||||||| |||||||| || Sbjct 51123 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 51064 Query 183738 CCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTC 183797 ||||||| | ||||| |||||||| ||||||||||| | ||| || ||||||||||| Sbjct 51063 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 51004 Query 183798 TCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTA 183857 | | |||||||| || | | |||||||| ||||| || ||| ||| | ||||| Sbjct 51003 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 50944 Query 183858 CAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCAT 183903 | ||||||||||||||||| || ||||||||||| ||||||||| Sbjct 50943 CCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 196 bits (216), Expect = 6e-45 Identities = 179/226 (79%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 183678 TGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 183737 ||| || || |||| ||| | || ||||||||||| ||||||||||| |||||||| || Sbjct 143080 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 143139 Query 183738 CCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTC 183797 ||||||| | ||||| |||||||| ||||||||||| | ||| || ||||||||||| Sbjct 143140 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 143199 Query 183798 TCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTA 183857 | | |||||||| || | | |||||||| ||||| || ||| ||| | ||||| Sbjct 143200 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGGTTA 143259 Query 183858 CAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCAT 183903 | ||||||||||||||||| || ||||||||||| ||||||||| Sbjct 143260 CCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 152 bits (168), Expect = 6e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 183328 GACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTGGT 183387 || || ||||| ||||| ||| | || || || | || || ||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 183388 GCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCA 183447 || || | || |||| |||||||| || ||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 183448 TCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTTCCTC 183507 || || || |||||| | || |||||||||||||||||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 183508 ATTGGCGTCTTCTGCTACATGGGT 183531 | || || | ||||||||||||| Sbjct 53804 CTAGGTGTATACTGCTACATGGGT 53781 Score = 152 bits (168), Expect = 6e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 183328 GACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAACATCATCTCTGGT 183387 || || ||||| ||||| ||| | || || || | || || ||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 183388 GCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCA 183447 || || | || |||| |||||||| || ||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 183448 TCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTCTTCCACTTCCTC 183507 || || || |||||| | || |||||||||||||||||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 183508 ATTGGCGTCTTCTGCTACATGGGT 183531 | || || | ||||||||||||| Sbjct 140399 CTAGGTGTATACTGCTACATGGGT 140422 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 183532 CGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGC 183591 |||||||||||||| |||| |||| | ||||||||||| |||||| ||| ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 183592 GCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTT 183651 || || || ||||| || | ||||| ||| | || || ||| |||| |||||||| || Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 183652 AGTGATGGTATGCC 183665 ||| |||||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 183532 CGTGAGTGGGAATTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGC 183591 |||||||||||||| |||| |||| | ||||||||||| |||||| ||| ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 183592 GCACCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTT 183651 || || || ||||| || | ||||| ||| | || || ||| |||| |||||||| || Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 183652 AGTGATGGTATGCC 183665 ||| |||||||| Sbjct 141955 TCTGACGGTATGCC 141968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622058285178960