Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1558 585 3e-162 >seq1558 Length=203828 Score = 585 bits (648), Expect = 3e-162 Identities = 747/1028 (73%), Gaps = 8/1028 (1%) Strand=Plus/Minus Query 165150 TGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCT 165209 |||||||||| | ||| ||||||||| |||||||||||| || || || ||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 165210 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACT 165269 || | | || || || |||||| |||| | || |||||| | ||||| |||||| Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 165270 TTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTT 165329 ||||| || |||||||| || || | || | ||| || | || ||| ||||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 165330 CTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGG 165389 | || || || |||||||| || || || ||||| ||| |||||||| || | ||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 165390 GGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTT 165449 ||||| || ||||||| || |||| || ||||| |||||||| || | ||| | || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 165450 GTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCA 165509 || || | ||||| || |||| | || |||||||||||||| ||||||||| | || Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 165510 CGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 165565 || || ||| | ||||| ||||| || ||||||||||| | || |||||||| Sbjct 175233 CGT----TCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGT 175178 Query 165566 ATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTC 165625 ||||||| || || || || || || | || ||||| |||||||| ||||| Sbjct 175177 ATTCGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAG 175118 Query 165626 GTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGAC 165685 ||||| || || || |||||||| ||| | | ||| ||||||| ||||| |||||||| Sbjct 175117 TTTCGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGAC 175058 Query 165686 GCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGC 165745 || || || || ||||||||||| || || ||| | ||||| | || || | | ||| Sbjct 175057 ACTTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGC 174998 Query 165746 CATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTT 165805 ||||| |||| ||| || || || || || | ||||| ||||| || ||||| || Sbjct 174997 TATTCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATT 174938 Query 165806 CAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTT 165865 | ||||| | ||| |||| || ||||| || || ||||| |||||||||||||| Sbjct 174937 CCGTGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTT 174878 Query 165866 CTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCT 165925 |||||| || || || ||| |||||||| || || ||||||||||||||||| ||| | Sbjct 174877 CTGGTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTT 174818 Query 165926 CTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAA 165985 || ||||| || | || ||||||| ||| |||||||| | | ||| | || || || Sbjct 174817 ATTAGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAA 174758 Query 165986 TCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGA 166045 | |||||||| || || || || || |||||| | |||||||| || || || || || Sbjct 174757 CTTACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGA 174698 Query 166046 AACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGT 166105 ||| ||||| || |||||||| || ||||| ||||| | ||||| ||| ||||| || Sbjct 174697 AACATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCA 174638 Query 166106 AGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACT 166165 ||||||||| || || || || |||||||||||||| || ||| | || ||||| || Sbjct 174637 AGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCT 174578 Query 166166 TTAAAATA 166173 ||| ||| Sbjct 174577 ATAATATA 174570 Score = 253 bits (280), Expect = 2e-62 Identities = 224/277 (81%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 164636 GGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCAC 164695 ||||||||||||||||| || |||||||||||||| ||||||||||| ||||| | ||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 164696 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACC 164755 |||||| | || || ||||| || ||||||| ||||| |||||| | || ||| || | Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCAAC 48959 Query 164756 -ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCG 164814 |||||||||||| | |||||||||||||||||||| || | | || || ||||| Sbjct 48958 TATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCG 48899 Query 164815 TGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCA 164874 ||| || ||||| ||||||||| | ||||||||||| | || |||||||| ||||| Sbjct 48898 TGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCA 48839 Query 164875 CGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 164911 ||||||||| ||||||||||||||||| ||| | ||| Sbjct 48838 CGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 253 bits (280), Expect = 2e-62 Identities = 224/277 (81%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 164636 GGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCAC 164695 ||||||||||||||||| || |||||||||||||| ||||||||||| ||||| | ||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 164696 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGC-AC 164754 |||||| | || || ||||| || ||||||| ||||| |||||| | || ||| | || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGG-TTTATCAAC 145244 Query 164755 CATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCG 164814 |||||||||||| | |||||||||||||||||||| || | | || || ||||| Sbjct 145245 TATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCG 145304 Query 164815 TGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCA 164874 ||| || ||||| ||||||||| | ||||||||||| | || |||||||| ||||| Sbjct 145305 TGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCA 145364 Query 164875 CGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCT 164911 ||||||||| ||||||||||||||||| ||| | ||| Sbjct 145365 CGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 164405 ATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCAC 164464 |||||||| || ||||||| |||| | || ||||| || || ||||||||||| |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 164465 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 || ||||| ||| | || || || ||||| || || ||||| | ||| || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTAT 164584 ||||| | |||||||| || | | ||||| || || ||||| || || ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 164585 GGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCA 164634 |||||| || ||||| ||||||||||| |||||||| || || ||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 164405 ATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCAC 164464 |||||||| || ||||||| |||| | || ||||| || || ||||||||||| |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 164465 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 || ||||| ||| | || || || ||||| || || ||||| | ||| || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTAT 164584 ||||| | |||||||| || | | ||||| || || ||||| || || ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 164585 GGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCA 164634 |||||| || ||||| ||||||||||| |||||||| || || ||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 159 bits (176), Expect = 4e-34 Identities = 160/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 164060 GATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGT 164119 ||||| ||||| ||||| || | ||||| || | || || ||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 164120 GCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCA 164179 ||||| ||||| |||||||||| |||||||| ||||||||||| || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 164180 AGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTG 164239 ||| ||||| ||| | |||||||||||||||| |||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 164240 ATTGGCATCTA-TGCTTACATGGGT 164263 | || | || ||| ||||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGGT 53781 Score = 159 bits (176), Expect = 4e-34 Identities = 160/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 164060 GATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGT 164119 ||||| ||||| ||||| || | ||||| || | || || ||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 164120 GCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCA 164179 ||||| ||||| |||||||||| |||||||| ||||||||||| || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 164180 AGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTG 164239 ||| ||||| ||| | |||||||||||||||| |||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 164240 ATTGGCATCTA-TGCTTACATGGGT 164263 | || | || ||| ||||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGGT 140422 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 164264 CGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCT 164323 |||||||||||| | |||| |||| | ||||||||||| ||||| ||||| ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 164324 GCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTC 164383 ||||| || |||||||| || || ||| | || || ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 164384 TCTGATGCAATGCCT 164398 ||||| | |||||| Sbjct 52248 TCTGACGGTATGCCT 52234 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 164264 CGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCT 164323 |||||||||||| | |||| |||| | ||||||||||| ||||| ||||| ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 164324 GCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTC 164383 ||||| || |||||||| || || ||| | || || ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 164384 TCTGATGCAATGCCT 164398 ||||| | |||||| Sbjct 141955 TCTGACGGTATGCCT 141969 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 || ||| | ||| | |||||||| || || ||||| || ||||||||||||| || | Sbjct 55365 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 55306 Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCT 164047 ||||| || || || || | || || || ||||||||||| ||||||| |||||| Sbjct 55305 ATGATCCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 55246 Query 164048 CCTGTGGACATC 164059 || || |||||| Sbjct 55245 CCAGTAGACATC 55234 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 || ||| | ||| | |||||||| || || ||||| || ||||||||||||| || | Sbjct 138838 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 138897 Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCT 164047 ||||| || || || || | || || || ||||||||||| ||||||| |||||| Sbjct 138898 ATGATCCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 138957 Query 164048 CCTGTGGACATC 164059 || || |||||| Sbjct 138958 CCAGTAGACATC 138969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557643539680560