Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1558 601 4e-167 >seq1558 Length=203828 Score = 601 bits (666), Expect = 4e-167 Identities = 752/1026 (73%), Gaps = 4/1026 (0%) Strand=Plus/Minus Query 178836 TGGTTTGATGTACTC-GATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTC 178894 ||||| |||| || | |||||||||||| | || || ||||| || || |||||||| Sbjct 175593 TGGTTCGATG-ACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTC 175535 Query 178895 AGGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAAC 178954 |||| | | || |||||| ||||||| | ||| | || |||||| | || || || || Sbjct 175534 AGGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTAC 175475 Query 178955 ATTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTT 179014 ||||| || || |||||||| || || | ||| |||| || | || || ||||| || Sbjct 175474 TTTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 175415 Query 179015 CCTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATG 179074 | | || || ||||| || || |||||| || | | | || || || || || | || Sbjct 175414 CTTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTG 175355 Query 179075 GGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTT 179134 ||||||||||||||| || |||||| || ||| |||||||| || ||||| | || Sbjct 175354 GGGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATT 175295 Query 179135 TGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGC 179194 || || | |||||||| || | | | || |||||||||||||| ||||||||||| || Sbjct 175294 CGTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGC 175235 Query 179195 ACGTCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTT 179254 ||| ||| | ||||| ||||| ||||| || || || | ||||||||||| || Sbjct 175234 TCGTTCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATT 175175 Query 179255 TGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTT 179314 || || || || || || || || | || || || ||||||||||| || | ||| Sbjct 175174 CGTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACC-TAGTT 175116 Query 179315 T-GGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGC 179373 | || || || || || ||||| ||| | | ||| | || || |||||||||||||| | Sbjct 175115 TCGGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACAC 175056 Query 179374 TCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCA 179433 | ||||| ||||||||||||||||| || ||| | | || | || || | ||||| | Sbjct 175055 TTAACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTA 174996 Query 179434 TTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCA 179493 |||| |||||||| || || |||||| | || |||||| ||||| | || |||||| Sbjct 174995 TTCACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCC 174936 Query 179494 AGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCT 179553 |||||| | |||||||| | || || || || || ||||||||||| |||||||||| Sbjct 174935 GTGCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCT 174876 Query 179554 GGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGT 179613 |||| || ||||| ||| | || ||| || || |||||||| || ||||| ||||| | Sbjct 174875 GGTCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTAT 174816 Query 179614 TTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACC 179673 | ||||| || | |||||||||| | |||||| || | ||| | || || ||| Sbjct 174815 TAGTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAACT 174756 Query 179674 TTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGA 179733 | | ||||| ||||| || ||||||||||| | || || || || ||||| ||||| | Sbjct 174755 TACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAA 174696 Query 179734 CGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCG 179793 | ||||| || || ||||| || | || |||||| | |||||||||||||| | | Sbjct 174695 CATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 174636 Query 179794 ATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGT 179853 | |||||||| ||| || ||||| |||||||||||||| ||| | || |||||||| | Sbjct 174635 ACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTAT 174576 Query 179854 GATATA 179859 ||||| Sbjct 174575 AATATA 174570 Score = 244 bits (270), Expect = 1e-59 Identities = 223/279 (80%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 178304 ATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGC 178363 |||||||||| ||||| || |||||||||||||| || ||||||||||| ||||| | | Sbjct 49079 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 49020 Query 178364 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCA 178423 |||||||| | || || ||||| || ||||||| |||||||||||| | ||| ||| || Sbjct 49019 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCA 48961 Query 178424 CC-ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGC 178482 | |||||||||||| | |||||||||||||||||||| || | | || || || Sbjct 48960 ACTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGT 48901 Query 178483 AAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATG 178542 || || ||||| ||||||||| | ||||||||||| | ||||||||||| ||| Sbjct 48900 CGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 48841 Query 178543 CACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCT 178581 ||||||||||| ||||||||||||||||| ||| | ||| Sbjct 48840 CACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 244 bits (270), Expect = 1e-59 Identities = 223/279 (80%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 178304 ATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGC 178363 |||||||||| ||||| || |||||||||||||| || ||||||||||| ||||| | | Sbjct 145124 ATGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTAC 145183 Query 178364 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGC- 178422 |||||||| | || || ||||| || ||||||| |||||||||||| | ||| ||| | Sbjct 145184 ACTTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGT-TTATCA 145242 Query 178423 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGC 178482 || |||||||||||| | |||||||||||||||||||| || | | || || || Sbjct 145243 ACTATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGT 145302 Query 178483 AAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATG 178542 || || ||||| ||||||||| | ||||||||||| | ||||||||||| ||| Sbjct 145303 CGTGTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATG 145362 Query 178543 CACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCT 178581 ||||||||||| ||||||||||||||||| ||| | ||| Sbjct 145363 CACGAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 203 bits (224), Expect = 4e-47 Identities = 183/228 (80%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 178080 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 178139 ||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||||| || Sbjct 51123 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 51064 Query 178140 CCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTC 178199 ||||||||| || || |||||||| || |||||||| | ||| || ||||||||||| Sbjct 51063 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 51004 Query 178200 TCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--AACTATGGT 178257 | | |||||||| || | | |||||||| || || |||||| |||| ||| | ||| Sbjct 51003 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAA--TCAGCTAACGAAGGT 50946 Query 178258 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCAT 178305 ||| ||||||||||||||||| || |||||||| || ||||||||| Sbjct 50945 TACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 50898 Score = 203 bits (224), Expect = 4e-47 Identities = 183/228 (80%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 178080 TGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 178139 ||| || ||||||| |||| | || ||||||||||| ||||||||||| |||||||| || Sbjct 143080 TGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCACCCATT 143139 Query 178140 CCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTC 178199 ||||||||| || || |||||||| || |||||||| | ||| || ||||||||||| Sbjct 143140 CCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCACGGTTC 143199 Query 178200 TCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--AACTATGGT 178257 | | |||||||| || | | |||||||| || || |||||| |||| ||| | ||| Sbjct 143200 TTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAA--TCAGCTAACGAAGGT 143257 Query 178258 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCAT 178305 ||| ||||||||||||||||| || |||||||| || ||||||||| Sbjct 143258 TACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCAT 143305 Score = 156 bits (172), Expect = 5e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 177730 GACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGT 177789 || || ||||||||||| || | ||||| || | || || |||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 177790 GCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCT 177849 ||||| | || |||||||||| || ||||| |||||||| || || |||||||| ||| Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 177850 TCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTG 177909 ||||| || |||||| | ||||| |||||||||| |||||| | | | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 177910 ATCGGTATCTA-TGCATACATGGGT 177933 | ||| | || ||| ||||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGGT 53781 Score = 156 bits (172), Expect = 5e-33 Identities = 159/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 177730 GACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAACATCATTTCTGGT 177789 || || ||||||||||| || | ||||| || | || || |||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 177790 GCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCT 177849 ||||| | || |||||||||| || ||||| |||||||| || || |||||||| ||| Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 177850 TCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTG 177909 ||||| || |||||| | ||||| |||||||||| |||||| | | | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 177910 ATCGGTATCTA-TGCATACATGGGT 177933 | ||| | || ||| ||||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGGT 140422 Score = 147 bits (162), Expect = 3e-30 Identities = 113/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 177934 CGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCT 177993 |||||||||||| | |||| ||| ||||||||||||| |||||| |||||| ||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 177994 GCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTC 178053 |||||||| || ||||| || ||||||||| | ||||| ||| |||| |||||||| ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 178054 TCTGACGCTATGCC 178067 ||||||| |||||| Sbjct 52248 TCTGACGGTATGCC 52235 Score = 147 bits (162), Expect = 3e-30 Identities = 113/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 177934 CGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCT 177993 |||||||||||| | |||| ||| ||||||||||||| |||||| |||||| ||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 177994 GCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTC 178053 |||||||| || ||||| || ||||||||| | ||||| ||| |||| |||||||| ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 178054 TCTGACGCTATGCC 178067 ||||||| |||||| Sbjct 141955 TCTGACGGTATGCC 141968 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 ||||| |||||||||||||||||||| ||||||||| |||||||||||||||| | Sbjct 41315 GGGGATATAGCTCAGTTGGTAGAGCGCTGCCTTTGCAAGGCAGATGTCAGCGGTTCGAAT 41374 Query 17919 CCGCTATTCTCCA 17931 ||||| |||||| Sbjct 41375 CCGCTTATCTCCA 41387 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 17859 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTTCGAGT 17918 ||||| |||||||||||||||||||| ||||||||| |||||||||||||||| | Sbjct 152888 GGGGATATAGCTCAGTTGGTAGAGCGCTGCCTTTGCAAGGCAGATGTCAGCGGTTCGAAT 152829 Query 17919 CCGCTATTCTCCA 17931 ||||| |||||| Sbjct 152828 CCGCTTATCTCCA 152816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596295586917280