Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1558 520 1e-142 >seq1558 Length=203828 Score = 520 bits (576), Expect = 1e-142 Identities = 739/1036 (71%), Gaps = 5/1036 (0%) Strand=Plus/Minus Query 170592 TGGTTCGATGTCCTGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCT 170651 |||||||||| | |||||||||||| | || || || ||||| || || ||||| Sbjct 175593 TGGTTCGATGACGCTGATGACTGGCTTCGTCAAGACCGTTTCGTATTCGTAGGTTGGTCA 175534 Query 170652 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACA 170711 || | | || || || |||||| ||||| | || || ||| | || || || || Sbjct 175533 GGTTTATTACTATTCCCTTGTGCTTACTTTGCATTAGGTGGTTGGTTAACTGGTACTACT 175474 Query 170712 TTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTC 170771 || ||||| ||||| || || || | || | ||| ||| | |||||| ||| ||| Sbjct 175473 TTCGTTACTTCATGGTATACGCATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 175414 Query 170772 CTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGG 170831 | ||||| ||||| || || |||||| | ||||| ||| |||||||| | ||||| Sbjct 175413 TTAACAGCAGCTGTTTCTACACCTGCTAACAGTATGGCTCACTCTCTTCTATTTGTTTGG 175354 Query 170832 GGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTT 170891 ||||| || |||| || |||||| || |||| |||||||| || | ||| || Sbjct 175353 GGTCCAGAAGCTCAAGGTGATTTCACTCGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 175294 Query 170892 GTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGT 170951 || || | ||||| || |||| | | || |||||||||||||| ||||||||||| | Sbjct 175293 GTTGCTTTACACGGTGCATTTGGTTTAATTGGTTTCATGCTTCGTCAGTTTGAAATTGCT 175234 Query 170952 CGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTT 171011 ||| ||| | | || ||||| ||||| |||||||| | || || ||||| || Sbjct 175233 CGTTCAGTAAACTTACGTCCATACAACGCAATTGCTTTCTCAGCACCAATTGCTGTATTC 175174 Query 171012 GTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTT 171071 || || ||||| || || || | || || ||| |||||||||| |||||| || Sbjct 175173 GTTTCAGTATTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCTAGTTTC 175114 Query 171072 GGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTG 171131 || || || || |||||||| ||| | | ||| | ||||||||||||||||||||||| Sbjct 175113 GGTGTAGCTGCTATCTTCCGTTTCATTTTATTCTTCCAAGGTTTCCACAACTGGACACTT 175054 Query 171132 AATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATT 171191 || ||||| || |||||||||||||| ||| | | || | ||| || | | ||| ||| Sbjct 175053 AACCCATTCCACATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATT 174994 Query 171192 CATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAG 171251 || |||| ||| || || || || || | ||||| ||||| || ||||| || Sbjct 174993 CACGGTGCTACTGTTGAAAACACATTATTCGAAGACGGTGACGGTGCTAACACATTCCGT 174934 Query 171252 GCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGG 171311 ||||| || | || |||| ||||| ||||| |||||||| |||||||| ||||||||| Sbjct 174933 GCATTCAACCCTACACAGGCTGAAGAAACATACTCTATGGTTACTGCTAACCGTTTCTGG 174874 Query 171312 TCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTT 171371 || || || || ||| | || ||| || || |||||| | || ||||| ||| | || Sbjct 174873 TCACAAATCTTCGGTGTTGCTTTCTCTAACAAACGTTGGCTTCACTTCTTCATGTTATTA 174814 Query 171372 GTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTT 171431 ||||| || | ||||||||| | ||| | | || || | ||| | ||||| || ||| Sbjct 174813 GTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTCTAAA-CTT 174755 Query 171432 AGG-GCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGAC 171490 | | ||||| || |||||| || ||| | | || || ||||| || || ||||| || Sbjct 174754 ACGTGCTTACGACTTCGTATCACAAGAGATTCGTGCTGCTGAAGACCCTGAATTCGAAAC 174695 Query 171491 GTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGA 171550 ||||| || || ||||| || | || |||||| ||||||| |||||||| | ||| Sbjct 174694 ATTCTACACTAAAAACATTCTTCTTAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 174635 Query 171551 CCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTG 171610 ||||||||| ||| || || ||||| || ||||| |||| ||||| || || || | Sbjct 174634 CCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCACGTGGTAACGCTCTATA 174575 Query 171611 AT---TTCTGATATAA 171623 || || | |||||| Sbjct 174574 ATATATTTTTATATAA 174559 Score = 250 bits (276), Expect = 3e-61 Identities = 221/276 (80%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 170060 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCAC 170119 |||||||| ||||| || ||||||||||||||||| ||||||||||| |||||| | ||| Sbjct 49077 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 49018 Query 170120 TTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACG 170179 |||||| | || || ||||| || | || || |||||||| ||| | ||| | || || Sbjct 49017 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 48958 Query 170180 ATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 170239 ||||| |||||| | |||||||||||||||||||| || | | || || |||||| Sbjct 48957 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 48898 Query 170240 GTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 170299 || || ||||| ||||||||| | ||||||||||| | || |||||||| |||||| Sbjct 48897 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 48838 Query 170300 GAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCT 170335 |||||||| ||||||||||||||||| ||| | ||| Sbjct 48837 GAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 48802 Score = 250 bits (276), Expect = 3e-61 Identities = 221/276 (80%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 170060 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCAC 170119 |||||||| ||||| || ||||||||||||||||| ||||||||||| |||||| | ||| Sbjct 145126 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCATTACAC 145185 Query 170120 TTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACG 170179 |||||| | || || ||||| || | || || |||||||| ||| | ||| | || || Sbjct 145186 TTCTTCTTAGCTGCTTGGCCGGTAATCGGTATTTGGTTCACTGCTTTAGGTTTATCAACT 145245 Query 170180 ATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 170239 ||||| |||||| | |||||||||||||||||||| || | | || || |||||| Sbjct 145246 ATGGCATTCAACTTAAACGGTTTCAACTTCAACCAATCAGTAGTAGACTCACAAGGTCGT 145305 Query 170240 GTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCAC 170299 || || ||||| ||||||||| | ||||||||||| | || |||||||| |||||| Sbjct 145306 GTACTAAACACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCAC 145365 Query 170300 GAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCT 170335 |||||||| ||||||||||||||||| ||| | ||| Sbjct 145366 GAGCGTAACGCTCACAACTTCCCTCTAGACTTAGCT 145401 Score = 159 bits (176), Expect = 4e-34 Identities = 160/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 169484 GACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGT 169543 || || ||||| ||||| ||| | |||||||| | || |||||||||||||| | ||| Sbjct 53984 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 53925 Query 169544 GCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCA 169603 ||||| | || |||| ||||||||||||||||||||||| || || |||||||| || Sbjct 53924 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 53865 Query 169604 AGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTC 169663 ||| || || ||||| |||||||||||||||| |||||| | || | |||||||| Sbjct 53864 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 53805 Query 169664 ATCGGCATCTA-TGCTTACATGGGT 169687 | || | || ||| ||||||||| Sbjct 53804 CTAGGTGTATACTGC-TACATGGGT 53781 Score = 159 bits (176), Expect = 4e-34 Identities = 160/205 (78%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 169484 GACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGT 169543 || || ||||| ||||| ||| | |||||||| | || |||||||||||||| | ||| Sbjct 140219 GATGGTATCCGTGAACCAGTTTCAGGTTCTCTTCTTTACGGTAACAACATCATTACAGGT 140278 Query 169544 GCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCA 169603 ||||| | || |||| ||||||||||||||||||||||| || || |||||||| || Sbjct 140279 GCTGTAATCCCAACTTCTAACGCAATCGGTCTTCACTTCTACCCAATTTGGGAAGCTGCT 140338 Query 169604 AGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTC 169663 ||| || || ||||| |||||||||||||||| |||||| | || | |||||||| Sbjct 140339 TCTCTAGACGAGTGGTTATACAACGGTGGTCCTTACCAACTTATCGTTTGTCACTTCCTT 140398 Query 169664 ATCGGCATCTA-TGCTTACATGGGT 169687 | || | || ||| ||||||||| Sbjct 140399 CTAGGTGTATACTGC-TACATGGGT 140422 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 169829 ATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCAC 169888 ||||| || || || |||| |||| | || |||||||| || ||||||||||| |||||| Sbjct 51128 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 51069 Query 169889 CCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCAC 169948 || ||||||||| | |||||||| || || || ||||| || | || || |||||| Sbjct 51068 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 51009 Query 169949 GGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTAT 170008 ||| | || ||||| | | |||||||||| || || ||||| || ||| | Sbjct 51008 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 50949 Query 170009 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCA 170058 |||||| ||||||||||||||||| || |||||||| || || ||||| Sbjct 50948 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 50899 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 169829 ATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCAC 169888 ||||| || || || |||| |||| | || |||||||| || ||||||||||| |||||| Sbjct 143075 ATCTCTGGTACTTTCAACTTCATGATCGTATTCCAAGCAGAACACAACATCCTTATGCAC 143134 Query 169889 CCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCAC 169948 || ||||||||| | |||||||| || || || ||||| || | || || |||||| Sbjct 143135 CCATTCCACATGTTAGGTGTTGCTGGTGTATTCGGTGGTTCATTATTCTCAGCTATGCAC 143194 Query 169949 GGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTAT 170008 ||| | || ||||| | | |||||||||| || || ||||| || ||| | Sbjct 143195 GGTTCTTTAGTTACTTCATCTTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAA 143254 Query 170009 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCA 170058 |||||| ||||||||||||||||| || |||||||| || || ||||| Sbjct 143255 GGTTACCGTTTCGGTCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCA 143304 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 169688 CGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCT 169747 |||||||||||||| || | ||| | |||||||| || |||||| ||| |||||||| Sbjct 52368 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 52309 Query 169748 GCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTC 169807 ||||| || || ||||| || ||||| ||| | || ||||| | || ||||| || ||| Sbjct 52308 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 52249 Query 169808 TCTGACGCTATGCCTCTGGGT 169828 ||||||| ||||||| | ||| Sbjct 52248 TCTGACGGTATGCCTTTAGGT 52228 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 169688 CGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCT 169747 |||||||||||||| || | ||| | |||||||| || |||||| ||| |||||||| Sbjct 141835 CGTGAGTGGGAATTATCTTTCCGTTTAGGTATGCGTCCATGGATCGCTGTAGCTTACTCA 141894 Query 169748 GCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTC 169807 ||||| || || ||||| || ||||| ||| | || ||||| | || ||||| || ||| Sbjct 141895 GCTCCAGTAGCTGCAGCTTCAGCTGTATTCTTAGTTTACCCTATCGGCCAAGGTTCATTC 141954 Query 169808 TCTGACGCTATGCCTCTGGGT 169828 ||||||| ||||||| | ||| Sbjct 141955 TCTGACGGTATGCCTTTAGGT 141975 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 || ||| | ||| | || || ||||| |||||| | || ||||||||||||| || | Sbjct 55365 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 55306 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| || || || | ||||| | ||||||||||| ||||||| |||||| Sbjct 55305 ATGATCCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 55246 Query 169472 CCTGTGGACATC 169483 || || |||||| Sbjct 55245 CCAGTAGACATC 55234 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 || ||| | ||| | || || ||||| |||||| | || ||||||||||||| || | Sbjct 138838 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 138897 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| || || || | ||||| | ||||||||||| ||||||| |||||| Sbjct 138898 ATGATCCCATGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 138957 Query 169472 CCTGTGGACATC 169483 || || |||||| Sbjct 138958 CCAGTAGACATC 138969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592186866936160