Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1542 120 6e-22 seq1491 100 6e-16 seq1505 96.9 7e-15 seq1556 86.0 1e-11 >seq1542 Length=2112382 Score = 120 bits (132), Expect = 6e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 316978 GATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGAACCCT 317037 || ||||||| ||| ||||| || || | || ||| | ||||| | |||||| || Sbjct 774033 GAGCCGTCGATGTCGTGCTCCACGTACACGGTGCGCAGCACGTCCTTGGGCGGGAAGCCG 774092 Query 317038 TCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCACCATTGGGGCCG 317097 |||| ||| ||||| |||| || | |||||| || |||||||| | || ||||||||| Sbjct 774093 TCCACCTGGCCGTTGGCAATGGCGCGCATCAGCGTGGACTTGCCCACGCCGTTGGGGCCG 774152 Query 317098 CAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGAATCTTA 317157 || || || || || || |||||| | || |||||| || |||||||| Sbjct 774153 CACAGGCCGTAGCGGCGGCCACGCTTCAGGCGCAGCGCGGCGTTGTTGAGCAGAATCTTG 774212 Query 317158 CCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCGCC 317201 |||| || ||||| |||||||| || | ||||| |||||||| Sbjct 774213 GCACCGTACGCCAGCGAGAACTCGCAGTTGCACAGCTCCTCGCC 774256 >seq1491 Length=442363 Score = 100 bits (110), Expect = 6e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| || || ||| | || || |||||||||| || || || Sbjct 109938 ACCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCCGAAGACTCCACCTC 109879 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||| ||||||| ||||| ||||| |||||||| Sbjct 109878 GAGCGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 109834 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | || || || ||||||||||||||||| Sbjct 109832 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 109773 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||| ||||| || || || ||||| ||||||| || || ||||| Sbjct 109772 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 109720 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | || || || ||||||||||||||||| Sbjct 110215 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 110156 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 || |||||||| ||||| || || || ||||| ||||||| || || ||||| Sbjct 110155 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 110103 >seq1505 Length=619805 Score = 96.9 bits (106), Expect = 7e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 273779 CGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTG 273838 |||| | ||||| | || || || ||||||||| || ||||||| || || ||||| Sbjct 184861 CGTGTAGATGTAGCGCGCGCTGGCGGCGTCCTTGCCGCCCTGCAGCCGCGTGCCGAACTG 184920 Query 273839 ACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCAC 273898 ||| ||| | ||| ||| | ||||||||| || ||| | ||||| |||| || || Sbjct 184921 ACCGCTGGGGTGCAGCAGGTTGACGTTGTTGCTGCCCACGAAGTCCTGCGCCAGGTTGAC 184980 Query 273899 GATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGC 273949 ||| || | ||| ||||||||||||| ||||||||||| ||||| Sbjct 184981 GATGGTGCTGGCCAGGCTGCCCTCGCCGTGGTGGTAGGCGCTGTGCTCGGC 185031 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 |||||||||||| || ||||| || || || | ||||| |||||||||| || || || Sbjct 503184 ACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCTC 503243 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| ||||||||||| | ||||| ||||| || ||||| Sbjct 503244 GAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAGATTTGCAT 503288 >seq1556 Length=6494944 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 168756 GTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1148620 GTATAGTGGTCAGTATCCCTGCCTGTCACGCAGGAGGCCGGGGTTCGATTCCCCG 1148674 Score = 86.0 bits (94), Expect = 1e-11 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 168756 GTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||| ||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1185987 GTATAGTGGTCAGTATCCCTGCCTGTCACGCAGGAGGCCGGGGTTCGATTCCCCG 1185933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046718305122932