Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1535 91.5 1e-13 seq1491 89.7 4e-13 seq1505 86.0 5e-12 >seq1535 Length=1731330 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 44119 CAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCG 44178 ||| | || ||||||||| || ||| |||||| ||||||||||| ||||| || ||| Sbjct 1340472 CAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCG 1340531 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 |||| ||||||||||| || || || |||| ||||||||| || Sbjct 1340532 GCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGACGCTGCTGGTC 1340576 >seq1491 Length=442363 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 109836 CATGCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC 109777 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || || ||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 109776 AGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 109720 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || || |||||| ||||||||||| || || Sbjct 110215 CCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 110156 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || ||| |||| ||||||||||| ||||| ||||||| |||||||| || Sbjct 110155 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 110103 >seq1505 Length=619805 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 44232 CACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCT 44291 |||| ||||| ||| ||||| ||||| | | |||||||| | || ||||||| Sbjct 503183 CACCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGACTCCACCT 503242 Query 44292 CCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | | || || ||||| |||||||||||||||||||||||||||||| Sbjct 503243 CGAGGGTGATGGTCTTACCCGTGAGGGTCTTCACGAAGATTTGCATG 503289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359983564457286