Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20reinhardtii_20[refseq_20GCF_5F000002595.1_202007-10- 15] 1,558 sequences; 120,404,952 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1491 118 1e-21 seq1535 114 1e-20 seq1505 87.8 2e-12 seq1555 84.2 2e-11 >seq1491 Length=442363 Score = 118 bits (130), Expect = 1e-21 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||| || ||||||||| ||||| ||||| | Sbjct 109833 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 109774 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 109773 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 109714 Score = 118 bits (130), Expect = 1e-21 Identities = 98/120 (82%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||| || ||||||||| ||||| ||||| | Sbjct 110216 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGC 110157 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 110156 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 110097 >seq1535 Length=1731330 Score = 114 bits (126), Expect = 1e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 41642 CGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTG 41701 || || || | |||||| ||||| ||| ||||||||| ||||| ||||||| |||||| Sbjct 1340470 CGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 1340529 Query 41702 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGC 41759 || |||| || ||||||||||| ||||| ||||| ||||| ||||||| ||||| || Sbjct 1340530 CGGCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGC 1340587 >seq1505 Length=619805 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| ||||| | |||||||| |||| || ||||||||||||||||| | Sbjct 502901 CCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 502960 Query 41733 TCAGGCGCTGTTGGTCCG 41750 |||| ||||| ||||||| Sbjct 502961 TCAGACGCTGCTGGTCCG 502978 >seq1555 Length=3824292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 41662 CAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTT 41721 || |||| | ||| | | ||||| ||||| | |||||||| |||| || |||||||| Sbjct 244311 CACCGTGGACCCCTCCAGTATGTTGTAGTCAGCCAGGGTGCGGCCGTCCTCCAGCTGCTT 244370 Query 41722 GCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 ||||||| | || |||||||| ||||||| || | || ||||||| Sbjct 244371 GCCGGCGGAGATGAGGCGCTGCTGGTCCGGCGGGAGGCCCTCCTTG 244416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462294996629600