Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq222 123 5e-23 seq32 107 4e-18 seq4349 93.3 9e-14 seq5217 91.5 3e-13 seq4354 91.5 3e-13 seq4011 91.5 3e-13 seq2562 91.5 3e-13 seq1785 91.5 3e-13 seq2794 89.7 1e-12 >seq222 Length=84561 Score = 123 bits (136), Expect = 5e-23 Identities = 141/188 (75%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 211264 CGGTGA-TCAAGTCACCGTTACGGGAGATCTGGGTGCTCACTTTGTTGCCAAATCCAACC 211322 |||||| | | ||| ||||| || |||| | | |||| || ||| || || || Sbjct 63281 CGGTGAATGAGGTCGCCGTTGCGACTGATCGTGCAGGTCACCTTCTTGTTGAAGTCACCC 63340 Query 211323 GAGCCATTGATCGTTTGTTGGATTGATTCAATGGCGAAGTTGGTGTAACGGCGGTAAACC 211382 ||||| |||| | || | ||| || || ||||| |||||||||| |||||| || || Sbjct 63341 GAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGGCGATACACG 63400 Query 211383 GTCTTGAAGAAGGTAATCTGGGGGTTGCCGGTCAGGTAAACGTCCTGGGCACCGTACGCG 211442 |||||| || || |||||||||||||| |||||||| | |||||| |||||||| ||| Sbjct 63401 ACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCACCGTAAGCG 63460 Query 211443 ACGAGCTG 211450 ||||| || Sbjct 63461 ACGAGTTG 63468 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 210751 TGGCGGTCTCGGAACCAGTGAACTGTAGCTGTTCGATCAGGTACTCGTGGGGTAGCTGGG 210810 ||| | |||| ||| |||||||| ||||| ||||| ||||||||||||| | ||||| Sbjct 62688 TGGTGCTCTCATCACCGGTGAACTGCAGCTGCTCGATGAGGTACTCGTGGGAGACCTGGG 62747 Query 210811 CGAAACGGGTGCGTTCTTGGGTATCCAGGAAGATGTAGTCAAC 210853 |||| ||| ||| || | ||| || ||| |||||||||| || Sbjct 62748 CGAAGCGGCGGCGCTCGTCGGTGTCGAGGTAGATGTAGTCGAC 62790 >seq32 Length=161680 Score = 107 bits (118), Expect = 4e-18 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 230410 GAAAAGGAGTTCATTTGTGA--CGCTATTCCATGTCGCCTTATTGGCATGAACGCTGAAC 230467 |||||| ||||| ||||| |||| || |||||| | || ||||||||||| | | Sbjct 59325 GAAAAGAGCTTCATCTGTGAATCGCTGC-CCGTGTCGC-TCATCGGCATGAACGCGCAGC 59268 Query 230468 TTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGT-TGCACTTGGTTACGAG 230526 | |||| ||||||||||| ||||| || ||| | | | || ||| ||||| | ||| Sbjct 59267 TCATGGAGCAGTACATCGAGTTCGTCGCTGACAGGCTCCTGGTGTGC-CTTGGCAATGAG 59209 Query 230527 AAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAG 230586 || || | | || | || || || | | ||||| ||||| || || || || ||| Sbjct 59208 AAGGTCTTCCACACCGCCAATCCTTTCGACTGGATGGAACTCATCTCTCTCCAGGGAAAG 59149 Query 230587 ACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 || ||||||||||| ||||| || |||||| |||| | |||| |||||| Sbjct 59148 ACAAACTTCTTCGAGAAGCGCGTTTCTGACTACCAGAAGGCTGGAGTGATG 59098 >seq4349 Length=3913 Score = 93.3 bits (102), Expect = 9e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 165706 GCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTC 165765 || |||||| |||||||||||||||||||| || || |||| || |||||||||||||| Sbjct 132 GCATGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 191 Query 165766 GAGCCCCACGATGGGC 165781 ||||||||| ||||| Sbjct 192 GAGCCCCACATTGGGC 207 >seq5217 Length=2299 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1623 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1564 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 1563 CCCCACATTGGGC 1551 >seq4354 Length=3902 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 530 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 471 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 470 CCCCACATTGGGC 458 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 3599 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3540 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 3539 CCCCACATTGGGC 3527 >seq4011 Length=4860 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 1994 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1935 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 1934 CCCCACATTGGGC 1922 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 4704 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4645 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 4644 CCCCACATTGGGC 4632 >seq2562 Length=12006 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 184 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 243 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 244 CCCCACATTGGGC 256 >seq1785 Length=20350 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 144 TGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 203 Query 165769 CCCCACGATGGGC 165781 |||||| ||||| Sbjct 204 CCCCACATTGGGC 216 >seq2794 Length=10408 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 10101 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 10042 Query 165770 CCCACGATGGGC 165781 ||||| ||||| Sbjct 10041 CCCACATTGGGC 10030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057730617280700