Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3574 109 7e-19 seq32 96.9 4e-15 seq263 82.4 9e-11 >seq3574 Length=6273 Score = 109 bits (120), Expect = 7e-19 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| |||||||| || |||||||| | || || | |||||||| || ||||| Sbjct 5815 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGG 5756 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||| ||||||||||| || ||||| || ||||| ||| || || || || || || Sbjct 5755 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGGAGCCGGAGAAAAA 5697 Query 24254 AATTCCTTCTACTGCCGCAAAGGC 24277 || || || || ||||| ||||| Sbjct 5696 GATGCCCTCCACGGCCGCGAAGGC 5673 >seq32 Length=161680 Score = 96.9 bits (106), Expect = 4e-15 Identities = 239/358 (67%), Gaps = 10/358 (3%) Strand=Plus/Plus Query 24132 AAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTG 24191 || || || || |||||||||||||||||||| | | || | || || ||||| ||| Sbjct 59405 AAGCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTG 59464 Query 24192 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAA 24250 || || ||||| || || || ||||| ||||| || |||| |||| ||||| || || || Sbjct 59465 AGCCCCGGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGG-CGCAGAATGAGCCCGAGAA 59523 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAA---GTCTTTC-TCCATAACCGGCGCTGT 24306 || || || || || || ||||| || | | | || | || | ||| || Sbjct 59524 AAAGATGCCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAACACATCCGACG---- 59579 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 | | |||||||| ||||| |||||| | | ||||| ||||||||||| || | Sbjct 59580 CCTCGATCCACTTCAACGCCCATGTGGCCTTTTGGGTCACACATGGCATTGTCTCAATGG 59639 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | ||||||| || ||| || | ||| || | || || | || || | Sbjct 59640 CGCGAAAGAGACGGTCTTTCTCGTGGACATCCTTGATGTAGTGGTCCAACAGCAGGGAGT 59699 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 || | || || | ||| ||||| || || || |||||||| ||||| | ||||| Sbjct 59700 ACGTCTCGCCGTGGACGTTCTCAATTGCGATCTGGAATCCGTAAAAACAACGCGCCTC 59757 >seq263 Length=80451 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || |||||||| || |||||||| | || || | | |||||||||||| || Sbjct 27941 CAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGTACGTTGGAAAACGACAGG 27882 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 24232 |||||||| ||||| ||||| || ||||| || ||||| Sbjct 27881 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA 27844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593670465727200