Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq32 246 3e-60 seq3574 174 2e-38 seq263 123 3e-23 seq589 120 3e-22 seq367 105 7e-18 seq4034 102 8e-17 seq1357 100 3e-16 seq678 86.0 6e-12 >seq32 Length=161680 Score = 246 bits (272), Expect = 3e-60 Identities = 504/731 (69%), Gaps = 31/731 (4%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 |||||||||||| | || |||||||| | ||||||| | || ||||| |||||| | Sbjct 59940 TACAAAAAGGCCCAAGCCAGCTTCTGGACTGCCGAGGAGATTGATCTGTCACAGGACAAG 59881 Query 116708 AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 | ||| | |||| | |||| | ||| | |||| ||||||||||||| || || Sbjct 59880 TGGGACGAGCTGCGC---AGCGACGAGCAGCAC--TTTC-TCAAGCACGTGCTCGCTTTC 59827 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 || || | || ||||||||||||||||| |||| ||| ||| | |||||| Sbjct 59826 TTTGCTACGTCTGATGGCATCGTCAACGAGAACCTGGCATCGCGCTTCATGCGCGAGGTG 59767 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 || | | |||||||| || || ||||| || |||||||| || |||||||| ||| Sbjct 59766 CAACTCCCAGAGGCGCGTTGTTTTTACGGATTCCAGATCGCAATTGAGAACGTCCACGGC 59707 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGTGC--GCTCTTCGGAGGAGAAGCTCCGTT 116945 || | ||| || || | ||| ||| | | | | | | ||||| |||| Sbjct 59706 GAGACGTACTCCCTGCTGTTGGACCACTACATCAAGGATGTCC--ACGAGAAAGACCGTC 59649 Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 | || |||||| ||||| ||||| || || | | |||||| |||||| || | Sbjct 59648 TCTTTCGCGCCATTGAGACAATGCCATGTGTGACCCAAAAGGCCACATGGGCGTTGAAGT 59589 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 |||||| ||| | | | |||| | |||| ||||||| || || || ||||||| Sbjct 59588 GGATCGA-GGCGTCG--GATGTGTTCGCCAGGCGCTTGGTGGCATTTGCAGCGGTCGAGG 59532 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 || |||| || |||||| ||| |||||| || |||||||| |||||||| ||||||| Sbjct 59531 GCATCTTTTTCTCGGGCTCATTCTGCGCCATCTTCTGGCTCAAAAAACGCGGGCTCATGC 59472 Query 117126 CCGGCCTGAC--TTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTT 117183 | || || || ||||| || ||||||||||| ||||||||||||| || |||||||| Sbjct 59471 CGGGGCTCACCTTTTCA--AATGAGCTCATCTCTCGGGACGAGGGTCTACACTGCGACTT 59414 Query 117184 TGCCTGTTTGCTGTTCAAGCATTTGGTGCAG-CGACCGAGCGCGGC-GC---GC-GTCAG 117237 ||| || || || | |||| || ||| | || | | |||| | || || | || Sbjct 59413 TGCGTGCTTCCTCTACAAG---ATGCTGCCGCCGTCGGCGCGCATCAGCAATGCTGACAT 59357 Query 117238 GGA---GATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCC 117294 || |||| | || || ||| ||| || || ||||| || ||| ||||||| Sbjct 59356 TGAAGCGATCATAGTGGATGCCGTCCGCATAGAAAAGAGCTTCATCTGTGAATCGCTGCC 59297 Query 117295 GGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGTCGCCG 117353 ||| || | || | || ||| | | ||| ||| ||||||||||||||||| | Sbjct 59296 CGTGTCGCTCATCGGCATGAA-CGCGCAGCTCATGGAGCAGTACATCGAGTTCGTCGCTG 59238 Query 117354 ACAGGCTGCTG 117364 ||||||| ||| Sbjct 59237 ACAGGCTCCTG 59227 >seq3574 Length=6273 Score = 174 bits (192), Expect = 2e-38 Identities = 152/189 (80%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 || |||| ||| || |||| ||||||||| ||||||||||||||||| |||||| ||| Sbjct 5638 CCCGCAGTGAGAGCGTCTTCTCCGAGCGCCTCGTGGCCTTCGCGGCCGTGGAGGGCATCT 5697 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 | || || ||| ||| | |||| || ||||||||||| || |||||||||||||||| Sbjct 5698 TTTTCTCCGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCC 5757 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 | || ||| ||||||||||||| | | |||||||| ||||| |||||||| ||||| Sbjct 5758 TCACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCC 5817 Query 117192 TGCTGTTCA 117200 |||| |||| Sbjct 5818 TGCTATTCA 5826 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/186 (73%), Gaps = 4/186 (2%) Strand=Plus/Plus Query 116681 GAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGC-GCTTGAACGACAACGAGCG 116739 |||||||| ||||| | | ||| || |||||||| |||| || ||| |||||| Sbjct 5015 GAGGAGGTTGACCTCGGCGACGACCAGAAGCACTGGGAGAAGCTT-AATGACGGCGAGCG 5073 Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 ||| ||||| |||| | || || || ||||| ||||||||||||||||| ||||| Sbjct 5074 CCACTTCATTTCGCACATTCTCGCTTTCTTCGCGGCCAGCGACGGCATCGTGCTGGAGAA 5133 Query 116800 TCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGC-TTCTACGGCT 116858 |||| | || ||| ||||||||||| || |||||| | || || | ||| ||| Sbjct 5134 CCTGGCCATTCGCTTCATGAAGGAGGTGCAGCTGCCCGAGGTG-GGCGCGTCCTAGAGCT 5192 Query 116859 TTCAGA 116864 ||| || Sbjct 5193 TTCCGA 5198 >seq263 Length=80451 Score = 123 bits (136), Expect = 3e-23 Identities = 119/153 (78%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 117082 CAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAG 117141 ||| ||| | |||| || ||||||||||| ||||||||||||||||||||| | || Sbjct 27834 CAGCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGTCGTTTTC 27893 Query 117142 CAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAA 117201 ||||| |||||| | | |||||||| ||||| |||||||||||||| | |||| ||| Sbjct 27894 CAACGTACTCATCAGCCGCGACGAGGGCCTGCACTGCGACTTTGCCTGCTGCCTGTACAA 27953 Query 117202 GCATTTGGTGCAGCGACCGAGCGCGGCGCGCGT 117234 ||| | ||| || | ||||| || |||||| Sbjct 27954 GCACCTCAAGCACCGCCTGAGCGAGGAGCGCGT 27986 >seq589 Length=52745 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || ||||||| || ||||| || || || |||| |||| Sbjct 25480 GGCATCCCCCCGGACCAGCAGCGGCTCATCTTTGCTGGCAAGCAACTCGAGGACGGGCGC 25539 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| |||||||||||||||||||||| |||||| || || ||| ||||| || || Sbjct 25540 ACGCTCGCCGACTACAACATCCAGAAGGAGAGCACGCTACACCTGGTGCTGCGCCTGCGG 25599 Query 40912 GGCG 40915 ||| Sbjct 25600 TGCG 25603 >seq367 Length=69066 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||| Sbjct 68930 GGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC 68871 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||| ||||||||| ||| ||||| || ||| ||||| || | Sbjct 68870 ACTCTGGCTGACTACAACATTCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 68811 Query 40912 GGCGGC 40917 || ||| Sbjct 68810 GGTGGC 68805 >seq4034 Length=4767 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| |||||||||| || || |||| || || || ||||| || || | |||| Sbjct 1885 GGCATTCCCCCGGACCAGCAGCGGCTAATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGC 1944 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| ||||||||| || ||| ||||| || || Sbjct 1945 ACGCTAGCGGACTACAACATCCAGAAGGAGAGCACGCTGCACCTGGTGCTGCGCCTGCGG 2004 Query 40912 GGCG 40915 ||| Sbjct 2005 TGCG 2008 >seq1357 Length=27981 Score = 100 bits (110), Expect = 3e-16 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| |||||||||| || ||||||| ||||||||| |||||||| |||| |||| Sbjct 4255 GGAATCCCCCCGGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGC 4196 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| ||||||||||| ||||||| Sbjct 4195 ACCCTTGCTGACTACAACATTCAGAAGG 4168 >seq678 Length=48865 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 |||| ||||| ||| || || |||||||| || || |||| || ||||| ||||| || Sbjct 42644 GACAGAGAGGCCATTCCGGCCGACCAGCAGCGGCTTATCTTTGCCGGCAAGCAGCTTGAG 42585 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||||| ||||||||||||||||| | | ||||||||| Sbjct 42584 GACGGCTGCACCCTGGCCGACTACAACATCCAGAGCGGGAGCACGCTGCA 42535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515174826746400