Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq222 98.7 9e-16 >seq222 Length=84561 Score = 98.7 bits (108), Expect = 9e-16 Identities = 221/329 (67%), Gaps = 15/329 (5%) Strand=Plus/Plus Query 134388 TTCGAAATCAACGCGGACTCGTGTAGAGTCTTGTAAATGCCATCGACGCTGTCGT----- 134442 || ||||| | |||| |||| | || || | |||||||| |||| ||||||| Sbjct 75002 TTGGAAATGACCGCGCACTCTTTGAGCGTGTCATAAATGCCCTCGATGCTGTCGCAGCCA 75061 Query 134443 ----CCTTGATGCTTTGCAGGAAACACGAACACATTTGTTGACGACGCGTACCCGCCGAA 134498 |||| ||| |||||| ||||| | ||| || | || |||| || | Sbjct 75062 TCGCCCTTCATGTGCACCAGGAAGCACGAGCTCATCTGAGGGCGCGGCGTGCCAGAGTTG 75121 Query 134499 AACAGAGTCGGGCTCGCGTGCGTAAA--GGTGCCCAGACTCATCAACTGATATGTTTCAA 134556 || || || || ||||||||| || || || | ||| |||| ||||| || || | Sbjct 75122 AAGAGCGTGGGCGACGCGTGCGTGAAACGGCGCTCCGAC--ATCAGGTGATACGTCTCGA 75179 Query 134557 TGACGCTCTTAACGTCGTCGCCGTGAATGGCCAGAGCGACGCGCATGAGCATGTGTTGGG 134616 || |||||| | ||||| |||| ||| |||| |||||||||||||||||||| || | Sbjct 75180 TGGCGCTCTCCAGGTCGTGCGCGTGGATGCCCAGCGCGACGCGCATGAGCATGTGCTGCG 75239 Query 134617 GTCTCTCCATGATCACGTCGTCGATTTTTAACAAATATCCATTGGT-GAGGGTTTTGAAA 134675 | | ||| | |||| | ||| || | || || | | | | || || ||||| Sbjct 75240 GGCGCTCAACGATCTCTCCGTTTATCCGCAGCAGGTA-CGAGCGTTCCAGTGTCTTGAAC 75298 Query 134676 CCGAAATATTTGTAATTGTAGTCTCTCTC 134704 || ||||| | ||| | ||||||||| || Sbjct 75299 CCAAAATAGTCGTACTCGTAGTCTCTGTC 75327 Score = 96.9 bits (106), Expect = 3e-15 Identities = 123/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 133783 CGACGTCGACGCACTTGTTGACG-GCAATACTGGCTAGATTACAAACGGCCGTCTCGTTC 133841 ||||| ||||||| | | || | ||||| || || || || || |||||||||| Sbjct 74358 CGACGACGACGCA-TCGAGGAAGCGCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCG 74416 Query 133842 TCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAttt 133901 | | |||| || |||||| | ||||||||||||||| ||||||||||||| || | Sbjct 74417 GGGCTGGTGTACTCGAGGATCTCCGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGT 74476 Query 133902 ttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGG 133948 | || ||||| | ||||| ||||||||||||||||||||| Sbjct 74477 TGCTGGTTGCTCTTGCGGTTGCAGGAATCCTTGTATAGCATGTACGG 74523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433793970447880