Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq367 102 9e-17 seq589 84.2 3e-11 >seq367 Length=69066 Score = 102 bits (112), Expect = 9e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||||||||||| ||||| ||||| ||||||||||| || || Sbjct 68818 CGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGCCAGAGTGCGGCCG 68877 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || |||||||| || ||||| || || ||||||||||| Sbjct 68878 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTC 68918 >seq589 Length=52745 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | ||||||||||| || || ||||| || || || || ||| || Sbjct 25592 CGCAGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCG 25533 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || || ||||| ||||| || ||||| ||||||||||| Sbjct 25532 TCCTCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTC 25492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571768352209200