Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq222 156 9e-33 seq34 122 2e-22 seq32 91.5 3e-13 >seq222 Length=84561 Score = 156 bits (172), Expect = 9e-33 Identities = 446/678 (66%), Gaps = 21/678 (3%) Strand=Plus/Minus Query 248781 CCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAAC 248840 ||||||| ||| | | || | || ||| | |||||||| | |||| ||||| || Sbjct 75349 CCTGGACAGCGAGCTGCGCTTTGACAGAGACTACGAGTACGACTATTTTGGGTTCAAGAC 75290 Query 248841 GCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACAT 248900 ||||| ||||| || || || | || ||||||| || || |||||||| Sbjct 75289 ACTGGAACGCTCGTACCTGCTGCGGATAAACGGAGAGATCGTTGAGCGCCCGCAGCACAT 75230 Query 248901 GTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTA 248960 | | ||||| || || | || || ||| | | ||| | ||||||| |||||||||| Sbjct 75229 GCTCATGCGCGTCGCGCTGGGCATCCACGCGCACGACCTGGAGAGCGCCATCGAGACGTA 75170 Query 248961 -CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 |||| || || || ||| | | || || || | || |||||||||||| | || | Sbjct 75169 TCACCTGA-TGTCGGAGCGCCGTTTCACGCACGCGTCGCCCACGCTCTTCAACTCTGGCA 75111 Query 249020 CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGA-CTCTG----- 249073 | | |||| ||||||||||||| || | |||| | | ||| ||| Sbjct 75110 CGCCGCGCCCTCAGATGAGCTCGTGCTTCCTGGTGCACATGAAGGGCGATGGCTGCGACA 75051 Query 249074 ---TCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCG 249130 |||| ||||||||||||||||| ||| || ||| ||||| || |||||| | Sbjct 75050 GCATCGAGGGCATTTATGACACGCTCAAAGAGTGCGCGGTCATTTCCAAGAACGCGGGTG 74991 Query 249131 GAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATG 249190 | ||||| || ||| | | ||||||| || | || || || ||| || || || | Sbjct 74990 GCATCGGCCTGTCCATTCACGACATCCGTGCCACCGGCTCCTATATCCGCGGCACCAACG 74931 Query 249191 G--GGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCAT 249248 | ||| | || ||||||||| | || || |||| | ||| || | | | | Sbjct 74930 GCACGTC--CAACGGCATCGTACCCATGCTGCGCGTCTTTAACGACACGGCGCGTTACGT 74873 Query 249249 CAACCAGGCCGGGCG----CCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACG 249304 |||||| ||||| || |||||| |||| ||||| || |||| ||||||| Sbjct 74872 GGACCAGG-GGGGCGGAAAGCGCAAGGGGGCGTTTGCCATTTACCTGGAGCCCTGGCACG 74814 Query 249305 CCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGC 249364 | || || || || ||| | || || |||||| |||| || ||| | | |||| Sbjct 74813 CTGACATTTTTGACTTCATCGAGCTGCGCAAGAACCACGGGAAAGAGGAGTCGCGCGCGC 74754 Query 249365 GTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACG 249424 | ||| | ||| | | |||||||| |||| | ||||||| || ||| |||| || | Sbjct 74753 GGGACTTGTTCCTTGCCATGTGGGTCAACGACCTCTTCATGCAGCGGGTCGAGGCGGATG 74694 Query 249425 GCGATTGGACGCTTCTTT 249442 || ||| ||| ||||| Sbjct 74693 CGGAGTGGTCGC-TCTTT 74677 >seq34 Length=156822 Score = 122 bits (134), Expect = 2e-22 Identities = 226/329 (69%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 248771 ACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTG 248830 || |||| | ||||||| ||| ||| ||||| | || || || ||||| | ||| | Sbjct 82423 ACTCGCAGCGCCTGGACAGCGAGATCCGCTACGACCGCGACTTCGACTACGACTACTTCG 82364 Query 248831 CTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAA 248890 ||||| ||||||||| || || || || || || ||| ||||||| || Sbjct 82363 GCTTCAAGACGCTGGAGCGCTCCTACCTGCTGCGCATCGACGGCCGCGTCGTGGAGCGGC 82304 Query 248891 TTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC 248950 ||||||||| | ||||||||||| | || || ||||||| ||| | ||| ||| Sbjct 82303 CGCAGCACATGCTTATGCGAGTGGCGCTGGGCATCCACAAGGGCGACCTGGAGGGCGCCA 82244 Query 248951 TCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCA 249010 ||| || ||| || ||||| || |||||| | || || ||| | || ||||| |||| Sbjct 82243 TCGGCACCTACCACGCCATGAGCGAGCGCTGGTTTACGCACGCCTCGCCCACGCTGTTCA 82184 Query 249011 ACGCCGGTAC-CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGAC 249069 ||||||| || | | | ||| ||||| ||||| || || ||||| || ||| Sbjct 82183 ACGCCGGCACGCCGCGGC-CGCAGATGAGCAGCTGCTTCCTGCTGTGCATGCCCGAGGAC 82125 Query 249070 TCTGTCGACGGCATTTATGACACGCTTAA 249098 | |||||||| || |||||||| || Sbjct 82124 AGCATTGACGGCATCTACGACACGCTCAA 82096 Score = 95.1 bits (104), Expect = 3e-14 Identities = 116/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 249251 ACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCG 249307 |||||| ||| || || ||||| | |||||||| || |||| |||||||| | Sbjct 81559 ACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTCGCCATCTACATGGAGCCCTGGCACGCTG 81500 Query 249308 ATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTG 249367 | | || || |||||||| || |||||| ||||||| ||| | | || || | Sbjct 81499 ACGTGTTTGACTTCCTGGAGCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGCGCCCGCG 81440 Query 249368 ACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 |||||||||||||||||||| || ||||| |||||||| Sbjct 81439 ACCTCTTCTACGGCCTGTGGATCCCCGACCTGTTCATG 81402 >seq32 Length=161680 Score = 91.5 bits (100), Expect = 3e-13 Identities = 127/176 (72%), Gaps = 8/176 (5%) Strand=Plus/Plus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || ||||| ||||||||||||||||| || | |||||||| ||||| || ||| Sbjct 59132 TTCTCGAAGAAGTTTGTCTTTCCCTGGAGAGAGATGAGTTCCATCCAGTCGAAAGGATTG 59191 Query 157334 GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA----GTCCGCCACAAA 157389 ||| || | | ||||| || | || | || || |||| | ||| || || || Sbjct 59192 GCGGTGTGGAAGACCTTCTCATTGCCAA---GGCACA-CCAGGAGCCTGTCAGCGACGAA 59247 Query 157390 CTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGACGGGAAGCG 157445 || |||||||| |||| || | || | || |||||||||| ||||| |||| Sbjct 59248 CTCGATGTACTGCTCCATGAGCTGCGCGTTCATGCCGATGAGCGACACGGGCAGCG 59303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073671609915520