Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq222 237 1e-57 seq34 116 3e-21 >seq222 Length=84561 Score = 237 bits (262), Expect = 1e-57 Identities = 620/938 (66%), Gaps = 21/938 (2%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || || || || || ||||| || ||| |||||| | |||||||| | || || Sbjct 74381 GCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAGGATCTCC 74440 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || ||||| ||||| || ||||||| || ||||||||| || || ||||| Sbjct 74441 GTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCTCTTGCGGTTGCAG 74500 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 ||||||||||| ||||||||||| || |||||||||| ||||| || | ||| || | Sbjct 74501 GAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGATGGCAAAC 74560 Query 23201 CACATAGTCTGAGCGTGAACACGTC--GCACGTACCTGCCTTCTTCCTCGTACTTTTGGT 23258 |||| ||| ||| | | |||| || || || ||| | |||||| || Sbjct 74561 CACAGCTGCTGGGCGCGGAT-CGTCTTGCGCGCACGCCCCT-CGCGCTCGTAGCGCGTGT 74618 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 | | | ||||| ||| | || | ||||| || || || |||| | | || || | Sbjct 74619 AGAGCCGCTCAAACTCGTCGCCCCAGCAGTCCGCTAGTCCAGGCGCCTCGTTGGGGCAAA 74678 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 ||| |||| | || || || || ||| || || || | ||| | | Sbjct 74679 AGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAGGTCGTTGACCCACATGG 74738 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 | ||||| || || |||||| ||||||||| ||| |||||| || || | | Sbjct 74739 CAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTTCCCGTGGTTCTTGCGCAGCTCGATGA 74798 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 |||| || | ||| || ||||| ||||| ||||||| ||||||||| ||| | ||| Sbjct 74799 AGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCCTTGCGCTTTC 74858 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||| ||||| || |||||||| ||||||| ||| | || | ||||| || |||| | Sbjct 74859 CGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATGGGTACGATGC 74918 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 ||||||||| |||| ||| | | || || | || || | || ||||| | Sbjct 74919 CGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATGTCGTGAA--T 74976 Query 23619 GGAAA--CCTATGCCTCCGCCCGAT-TTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 ||| | || ||||| || | || | || || || | |||||| | ||| || ||||| | Sbjct 74977 GGACAGGCCGATGCCACC-CGCGTTCTTGGAAATGACCGCGCACTCTTTGAGCGTGTCAT 75035 Query 23676 AGATGCCCTCGATGCTGTC----------CTCTTTGGTCGCGACCAAGAAACACGAAGAC 23725 | ||||||||||||||||| | ||| || |||| ||| ||||| | Sbjct 75036 AAATGCCCTCGATGCTGTCGCAGCCATCGCCCTTCATGTGC-ACCAGGAAGCACGAGCTC 75094 Query 23726 ATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCA 23785 || || | ||||| | | ||| || || || |||||||| || | Sbjct 75095 ATCTGAGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCGTGCGTGAAACGGCGC 75154 Query 23786 TTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATG 23845 | |||||| || | ||||| ||||||||| || | ||| | |||| || || | Sbjct 75155 TCCGACATCAGGTGATACGTCTCGATGGCGCTCTCCAGGTCGTGCGCGTGGATGCCCAGC 75214 Query 23846 GCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGA 23905 ||||||||||| | ||||| || || | ||| || | | ||||| || | ||| Sbjct 75215 GCGACGCGCATGAGCATGTGCTGCGGGCGCTCAACGATCTCTCCGTTTATCCGCAGCAGG 75274 Query 23906 TATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATA 23943 || || |||| || || || || ||||||||||| || Sbjct 75275 TACGAGCGTTCCAGTGTCTTGAACCCAAAATAGTCGTA 75312 Score = 125 bits (138), Expect = 6e-24 Identities = 504/784 (64%), Gaps = 31/784 (4%) Strand=Plus/Plus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 ||||| || |||| || || | ||||| || ||||| || || ||||||||||| Sbjct 73412 TCCACGGTGAACTTGATCGCATCCGCGGCAGGCCGCGTGCGCAGGTAGTACATGCCCGTT 73471 Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAG 22228 ||||| ||| | ||| |||||||| || | ||||||||| || | | | |||| | Sbjct 73472 TTCAGGCCCTTTCGCCAAGCGTAAAAGTGAAGCGACGTCAACTT-CGAGTAGTCGGGACT 73530 Query 22229 TCCATGTAC-ACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCAT 22287 || | | || ||||| ||||||||| || || || || || || || ||||| Sbjct 73531 CGCAAGAAAGACGTTGAAACTCTGACTCTGGTCAATGAATGCACCGCGGTCACATGCCAT 73590 Query 22288 ATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAA 22347 | | || || ||| | || ||||| ||||| ||||| || ||| ||| || Sbjct 73591 GTCGACCAGGGTGCGCTGCTTGATCTCCCAGACGGTTTTGTAGAGCTGCTTGAGGTCCTC 73650 Query 22348 CGGTATCGATTC--GATCCTCTGG-ACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 || ||| || || |||| ||| ||||| |||| ||| || || Sbjct 73651 CGAGATC---TCAGGAATGTCTGCCACGCTGCCGTTCGCAGCGATGAGTGCATTCTTGAT 73707 Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTG 22464 || ||||| | ||| | |||| || | | ||| || ||| || || Sbjct 73708 CGCGGGATTCCAGAGACCCTGCGAAGTCAGGTCATGAAGCAGGTGCGAGTTGACAACGGT 73767 Query 22465 AAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTC 22524 |||||||| || | |||||| || ||| |||||| ||| | || ||||| || || Sbjct 73768 GAACTCGCCAGAGAGGACGCGCCGCGCGTAGATGTTGCTGGTGTAAGGCTCGAACGACTC 73827 Query 22525 ATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTT 22584 |||| || || ||||| | ||||||||||||||||| || |||| ||| |||||||| Sbjct 73828 CGTGTTGCCAAGGATCTGCGACGTCGAAGCGGTCGGCATGGGAGCCACCAGCAGCGAGTT 73887 Query 22585 TCTCAAGCCGTGCTTTGAAAT-TTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGAC 22642 | || |||||| || ||| | | | | || || |||||| | | | Sbjct 73888 GCGCAGCCCGTGCGCTGCAATGTCGGCGCGCAGGGCTTC--CCAGTCAAA-------GTC 73938 Query 22643 GGCGTCACAT----------TGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692 || ||||||| | |||||| || | |||| |||||||| || |||| Sbjct 73939 GGGGTCACATGCAGGGGGCGGGCTCCACATGTCCTGCTGCAGGACGCCGCGGCTGACCGG 73998 Query 22693 GCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAA 22752 ||| || |||||||| ||||| | || | | || || ||||| ||| || Sbjct 73999 GCTCCCCTCGTACGTCTCGTAGGTGCCGTCCACTTTCGCCAGGGCGCAGGATGCCGTCAG 74058 Query 22753 CGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCG-GCGGCGACGCTTT 22811 ||| | | || || ||| ||||| |||||||| | | | || || || | || | Sbjct 74059 GGCGGCAAAGTAGATGCACTCAAAGATCTTCTTGTTGAGCT-GCCGTGCTGCCTCACTCT 74117 Query 22812 CGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCG 22871 | ||||||| | | || | |||| |||||||| ||||| | ||| || ||||| | Sbjct 74118 CAAACGGCATGCCGAGCAAGATCAACGTGTCCGCCAGTCCCTGGATGCCGATTCCGATGG 74177 Query 22872 GTCG 22875 | || Sbjct 74178 GACG 74181 >seq34 Length=156822 Score = 116 bits (128), Expect = 3e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 23351 CTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCT 23410 ||||| || || || || ||||| || ||||||| || |||||||||||| ||||||| Sbjct 81400 CTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGGGCGCGCGCCTCCTCC 81459 Query 23411 TTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGG 23470 |||||| |||||| || |||| ||||| |||||||| || ||||| ||||| | | Sbjct 81460 TTGCCGTGGTTCTTGCGCAGCTCCAGGAAGTCAAACACGTCAGCGTGCCAGGGCTCCATG 81519 Query 23471 TAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 || | ||| || |||||| | ||| ||||||||| || || || Sbjct 81520 TAGATGGCGAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCCACATA 81566 Score = 109 bits (120), Expect = 5e-19 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||| | || ||||| || || ||| ||||| || ||||||| || |||| Sbjct 80890 GTGTACTCGATGATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGG 80949 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || | ||||| | |||||||| |||||||| || |||||||||| ||||| Sbjct 80950 TTGCTCTTGCCGTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTGCCCGTCTCCACCTGG 81009 Query 23183 GACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAAC-ACGTCGCACGTACCTGCCTTC 23241 | ||| | ||| || ||||| ||| ||| | || ||| ||| | | |||| || Sbjct 81010 GCCTCCAGGATGGCGAACCACAGCTGCTGCGCGCGCACCACG-CGCTTGGCCTTGCCCTC 81068 Query 23242 TTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGG 23300 ||||||||| | ||||| | | || || | | || | | |||||||||||||| Sbjct 81069 GGACTCGTACTTGTTGTACAGCTCCTCGAACTTCTCGCCCCAGCTGTCGGCCAGGCCGG 81127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445728008368800