Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3574 114 2e-20 seq32 96.9 4e-15 seq263 82.4 1e-10 >seq3574 Length=6273 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| ||||||||||| |||||||| | || || | ||||| || || ||||| Sbjct 5815 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGG 5756 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||||||||| || ||||| || ||||| ||| || ||||| || ||| Sbjct 5755 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAAAAG 5696 Query 33702 ATTCCTTCTACTGCAGCAAAGGC 33724 || || || || || || ||||| Sbjct 5695 ATGCCCTCCACGGCCGCGAAGGC 5673 >seq32 Length=161680 Score = 96.9 bits (106), Expect = 4e-15 Identities = 237/357 (66%), Gaps = 8/357 (2%) Strand=Plus/Plus Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 || || || || |||||||| ||||||||||| | | || | || || ||||| ||| Sbjct 59405 AAGCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTG 59464 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 || || ||||| || || || ||||| ||||| || |||| |||||| || || || Sbjct 59465 AGCCCCGGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAA 59524 Query 33699 AAGATTCCTTCTACTGCAGCAAA-GGCAATAAGTCTCTCTC---CATAACCGGCGCTGTC 33754 ||||| || || || || ||||| | || ||| || | || | ||| || | Sbjct 59525 AAGATGCCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAACACATCCGACG----C 59580 Query 33755 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33814 | |||||||| ||||| |||||| | | ||||| ||||| || || ||||| Sbjct 59581 CTCGATCCACTTCAACGCCCATGTGGCCTTTTGGGTCACACATGGCATTGTCTCAATGGC 59640 Query 33815 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33874 ||||||| || ||| || | ||| || | || || | || || || Sbjct 59641 GCGAAAGAGACGGTCTTTCTCGTGGACATCCTTGATGTAGTGGTCCAACAGCAGGGAGTA 59700 Query 33875 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 | | || || | ||| ||||| || ||||| |||||||| ||||| | ||||| Sbjct 59701 CGTCTCGCCGTGGACGTTCTCAATTGCGATCTGGAATCCGTAAAAACAACGCGCCTC 59757 >seq263 Length=80451 Score = 82.4 bits (90), Expect = 1e-10 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||||||||||| |||||||| | || || | | |||| ||||||| || Sbjct 27941 CAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGTACGTTGGAAAACGACAGG 27882 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 33679 |||||||| ||||| ||||| || ||||| || ||||| Sbjct 27881 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA 27844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629763356959200