Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3574 122 1e-22 seq32 107 3e-18 seq263 91.5 2e-13 >seq3574 Length=6273 Score = 122 bits (134), Expect = 1e-22 Identities = 122/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || ||||| ||||||||||| |||||||| | || || || |||||||| || ||||| Sbjct 5815 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGG 5756 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||||||||| || ||||| || ||||| ||| || || || || || || Sbjct 5755 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGA-GCAGAAGGAGCCGGAGAAAAA 5697 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || || || ||||| || || | ||| Sbjct 5696 GATGCCCTCCACGGCCGCGAAGGCCACGAGGCGCTC 5661 >seq32 Length=161680 Score = 107 bits (118), Expect = 3e-18 Identities = 240/355 (68%), Gaps = 4/355 (1%) Strand=Plus/Plus Query 49957 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 50016 || || || || |||||||| ||||||||||| | | || || || || ||||| ||| Sbjct 59405 AAGCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTG 59464 Query 50017 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAA 50075 || || ||||| || || || ||||| ||||| || |||| |||| ||||| || || || Sbjct 59465 AGCCCCGGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGG-CGCAGAATGAGCCCGAGAA 59523 Query 50076 GAAGATTCCTTCTACTGCGGCAAA-GGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT 50134 ||||| || || || || ||||| | || |||| || | | || || | | | Sbjct 59524 AAAGATGCCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAACACATCCGACG-CCT 59582 Query 50135 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 50194 |||||||| ||||| |||||| | | ||||| ||||| || || ||||| Sbjct 59583 CGATCCACTTCAACGCCCATGTGGCCTTTTGGGTCACACATGGCATTGTCTCAATGGCGC 59642 Query 50195 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 50254 ||||||| || ||| || | ||| || | || || | || || ||| Sbjct 59643 GAAAGAGACGGTCTTTCTCGTGGACATCCTTGATGTAGTGGTCCAACAGCAGGGAGTACG 59702 Query 50255 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 | || || | ||| ||||| || ||||| |||||||| ||||| | ||||| Sbjct 59703 TCTCGCCGTGGACGTTCTCAATTGCGATCTGGAATCCGTAAAAACAACGCGCCTC 59757 >seq263 Length=80451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||||||||||| |||||||| | || || ||| |||||||||||| || Sbjct 27941 CAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGTACGTTGGAAAACGACAGG 27882 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 50057 |||||||| ||||| ||||| || ||||| || ||||| Sbjct 27881 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA 27844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718206939099600