Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq222 196 7e-45 seq32 152 8e-32 seq34 109 8e-19 seq3574 107 3e-18 >seq222 Length=84561 Score = 196 bits (216), Expect = 7e-45 Identities = 318/454 (70%), Gaps = 4/454 (1%) Strand=Plus/Minus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAAC 96965 ||| | ||| |||| || |||||||| ||| |||||||||| |||||| ||||||| ||| Sbjct 74838 GCCATTTACCTGGAGCCCTGGCACGCTGACATTTTTGACTTCATCGAGCTGCGCAAGAAC 74779 Query 96966 TCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTG 97025 || || ||| | || || |||||||||| ||| | ||||| || | Sbjct 74778 CACGGGAAAGAGGAGTCGCGCGCGCGGGACTTGTTCCTTGCCATGTGGGTCAACGACCTC 74719 Query 97026 TTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCC 97085 |||||| |||| ||| | | | || | ||| || | |||||| || | | || Sbjct 74718 TTCATGCAGCGGGTCGAGGCGGATGCGGAGTGGTCGCTCTTTTGCCCCAACGAGGCGCCT 74659 Query 97086 GGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAG 97145 || || | || ||||||||||| ||||||||| |||||| |||||||| ||| Sbjct 74658 GGACTAGCGGACTGCTGGGGCGACGAGTTTGAGCGGCTCTACACGCGCTACGAGCGCGAG 74599 Query 97146 GGCCGATACGTG--AGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTC 97203 || || | || | |||||| || || | | |||||| |||||| || || | Sbjct 74598 GGGCG-TGCGCGCAAGACGATCCGC-GCCCAGCAGCTGTGGTTTGCCATCCTGGATGCGC 74541 Query 97204 AGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACC 97263 || | ||||| || || |||||||| || ||||||||| || || ||||| ||||||| Sbjct 74540 AGATCGAGACGGGTACCCCGTACATGCTATACAAGGATTCCTGCAACCGCAAGAGCAACC 74481 Query 97264 AACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCT 97323 | | || |||||||||||||| || ||| || |||||||| || | |||||| || Sbjct 74480 AGCAACATCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGATCCTCGAGTACACCA 74421 Query 97324 CTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357 || ||||||||||| || ||| ||||| || Sbjct 74420 GCCCCGACGAGACGGCGGTCTGCAACCTGGCGTC 74387 Score = 89.7 bits (98), Expect = 8e-13 Identities = 136/187 (73%), Gaps = 10/187 (5%) Strand=Plus/Minus Query 98038 TCTACAAGACTGTCTGGGAGATTCCGACCAAG--ACGCTGATCGATATGGCTGCCGACAG 98095 ||||||| || ||||||||||| | | || || ||| |||| ||||| ||| | Sbjct 73634 TCTACAAAACCGTCTGGGAGAT--CAAGCAGCGCACCCTGGTCGACATGGCATGTGACCG 73577 Query 98096 AGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAG-CCCACCTACA 98154 |||| | ||||||||||||||| ||||| | | |||| ||| ||| |||| Sbjct 73576 CGGTGCATTCATTGACCAGAGTCAGAGTTTCAACGTCTTTCTTGC-GAGTCCCGACTAC- 73519 Query 98155 GTCGTA--TGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTA 98212 ||| | |||| ||| | ||||||||||| ||| |||||||| || ||||||||||| Sbjct 73518 -TCGAAGTTGACGTCGCTTCACTTTTACGCTTGGCGAAAGGGCCTGAAAACGGGCATGTA 73460 Query 98213 CTATCTG 98219 ||| ||| Sbjct 73459 CTACCTG 73453 >seq32 Length=161680 Score = 152 bits (168), Expect = 8e-32 Identities = 390/587 (66%), Gaps = 14/587 (2%) Strand=Plus/Minus Query 124987 GATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGG 125046 |||| | | | ||||| |||| | | ||| | ||| | | ||||||||||| || | Sbjct 59984 GATTCAGCATCTTTCCTATCAAGCACGATGGGCTCTGGCAGTTTTACAAAAAGGCCCAAG 59925 Query 125047 CCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTC 125106 || ||| ||||| | ||| ||| | |||||||| ||||| || || ||| | Sbjct 59924 CCAGCTTCTGGACTGCCGAGGAGATTGATCTGTCACAGGACAAGTGGGAC---GAGCTGC 59868 Query 125107 GTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCG 125166 | | | || |||| | ||| | |||| | | || |||||||| || | Sbjct 59867 G-----CAGCGAC-GAGCAGCACTTTCTCAAGCACGTGCTCGCTTTCTTTGCTACGTCTG 59814 Query 125167 ATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGG 125226 |||| ||||||||||| || ||| | || ||| | ||| || | ||||||| Sbjct 59813 ATGGCATCGTCAACGAGAACCTGGCATCGCGCTTCATGCGCGAGGTGCAACTCCCAGAGG 59754 Query 125227 TGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTA 125286 | || |||||||||||||| ||| ||||||||||| ||| || | |||||| Sbjct 59753 CGCGTTGTTTTTACGGATTCCAGATCGCAATTGAGAACGTCCACGGCGAGACGTACTCCC 59694 Query 125287 CACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCTTTAACGCAATCG 125346 ||| | ||| ||||| ||| || ||| || |||||| ||| || | Sbjct 59693 TGCTGTTGGACCACTACATCAAGGATGTCCACGAGAAAGACCGTCTCTTTCGCGCCATTG 59634 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || |||| | | | ||||||| ||||| | | ||||||||| | || | Sbjct 59633 AGACAATGCCATGTGTGACCCAAAAGGCCACATGGGCGTTGAAGTGGATCGAGG-CGTCG 59575 Query 125407 AGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGG 125466 | | || |||| | |||||||||| || || || ||||||||||| || |||| Sbjct 59574 GATGT--GTTCGCCAGGCGCTTGGTGGCATTTGCAGCGGTCGAGGGCATCTTTTTCTCGG 59517 Query 125467 G-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCAC 125525 | | || ||| |||||||| |||||||| || ||||| |||||||| || || || Sbjct 59516 GCTCATTCTGC-GCCATCTTCTGGCTCAAAAAACGCGGGCTCATGCCGGGGCTCACCTTT 59458 Query 125526 AGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 || ||| | || ||||| |||||||| |||||||| |||||||| Sbjct 59457 TCAAATGAGCTCATCTCTCGGGACGAGGGTCTACACTGCGACTTTGC 59411 >seq34 Length=156822 Score = 109 bits (120), Expect = 8e-19 Identities = 188/271 (69%), Gaps = 8/271 (3%) Strand=Plus/Minus Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||||||| | |||||| || || |||| ||| |||| |||||||||| |||| Sbjct 81155 TGGAGCCTGTTCTGCCCCAACGAGTGTGCCGGCCTGGCCGACAGCTGGGGCGAGAAGTTC 81096 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGA 97175 |||| ||||| |||||| |||||| | | | || || | ||| || Sbjct 81095 GAGGAGCTGTACAACAAGTACGAGTCCGAGGGCA---AGGCCAAGCGCGTGG-TGCGCGC 81040 Query 97176 GAA----CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | | |||||| |||||| || ||| ||||| ||||| || | || ||||| || Sbjct 81039 GCAGCAGCTGTGGTTCGCCATCCTGGAGGCCCAGGTGGAGACGGGCAACCCCTACATGCT 80980 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTC 97291 |||||||| || || |||| |||||||| | || |||||||||||||| |||| Sbjct 80979 GTACAAGGACGCCTGCAACGGCAAGAGCAACCAGCAGAACCTGGGCACCATCAAGTGCTC 80920 Query 97292 CAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 ||| |||||||| || || | |||||| || Sbjct 80919 CAACCTGTGCACCGAGATCATCGAGTACACC 80889 Score = 93.3 bits (102), Expect = 6e-14 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAG--ACGCTGATCGATATGGCTGCCGACAGAG 98097 |||||||| || |||||||| | | || ||||| | || ||||| |||||| | | Sbjct 79300 TACAAGACGGTGTGGGAGAT--CAAGCAGCGCACGCTTGTGGACATGGCCGCCGACCGCG 79243 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 | | |||||| |||||||| || ||||| | | | | |||| |||| || | | Sbjct 79242 GCGCCTACATCGACCAGAGCCAGAGCTTCAACGTCTTCATGCCCGACCCCAACTTCGGCA 79183 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 | || ||| | ||||| ||||| ||| ||||||||||||||| ||||||||||| | Sbjct 79182 AGCTCACCTCGCTGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACC 79123 Query 98218 TGAGAACAAAGT 98229 | | || |||| Sbjct 79122 TACGCACCAAGT 79111 >seq3574 Length=6273 Score = 107 bits (118), Expect = 3e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 125419 CCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCG 125477 |||| | || ||||| ||||| ||||| ||||||||||| || || || | || ||| Sbjct 5659 CCGAGCGCCTCGTGGCCTTCGCGGCCGTGGAGGGCATCTTTTTCTCCGGCTCCTTCTGCT 5718 Query 125478 GCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTT 125537 ||||||| |||||||||||||| || ||||||||||| || || | |||||| | Sbjct 5719 -CCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTCTCCAACGAGCTC 5777 Query 125538 ATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 || || ||||||||||| ||||| ||||| ||| Sbjct 5778 ATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCC 5813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740995376276400