Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq6015 641 5e-179 seq3788 379 3e-100 >seq6015 Length=1491 Score = 641 bits (710), Expect = 5e-179 Identities = 719/956 (75%), Gaps = 4/956 (0%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 || || |||||| | || || || ||||| | || | |||||||| || | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTT-ATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||| |||||| | || | ||| | || || | |||||||||||||| || Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 || || || || || || ||||| || || || |||||||||| | ||||| || || Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 ||||||| | |||||||| ||||| || ||||| || || | |||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 |||||||||||| ||||||| |||||| |||| || ||||||||||| |||||| | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | ||||||||| | ||||| | || ||||||||||| ||||||||| | |||| ||| Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792 | |||||||| || ||||| ||| ||||||||||| || || || || |||| || Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 135793 TGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCAT 135852 ||| ||| | || ||||| |||| |||||||| ||| ||||||||||| | || || Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 135853 TTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCC 135912 || ||||| |||| |||| | || ||||| || || |||||||| || ||||| || Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 135913 TTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 ||||||||||| || |||||||| || || |||||||| | |||||||| ||||| || Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 135973 ATCTCTTGTCACCTC-TAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATG 136031 || | || || || | || | | ||||| || ||||| ||||| ||| | | Sbjct 751 TTCATTAGTTACTTCATCGT-TAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAG 693 Query 136032 GTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCG 136091 ||||| || |||||||||||||| || |||||||| || || ||||| |||||||||| Sbjct 692 GTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCG 633 Query 136092 GTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTG 136151 ||||| | ||||||||||| || || ||||||||||||||||| ||||||| ||||| | Sbjct 632 GTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAG 573 Query 136152 CTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCA 136211 |||||||||| ||| ||||||| ||||| | || | || | || || ||||| |||| Sbjct 572 CTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCA 513 Query 136212 ACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACA 136271 |||| || || |||||||||||||| || ||||| || ||||||||||| | |||| Sbjct 512 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACA 453 Query 136272 CCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 | |||||||| | | || |||||| | |||||||| || |||||||||||| Sbjct 452 CTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGT 397 >seq3788 Length=5474 Score = 379 bits (420), Expect = 3e-100 Identities = 384/500 (77%), Gaps = 0/500 (0%) Strand=Plus/Minus Query 138378 CAGGGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTT 138437 || ||||||||||||||||| || ||||| || || |||||||| ||||| ||| || | Sbjct 2740 CAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTGGTGTTTTA 2681 Query 138438 GGTGGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGAT 138497 ||||||||| | | ||||||||||| |||||||| |||||||| || || | |||||| Sbjct 2680 GGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTATTCGAAGAT 2621 Query 138498 GGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCA 138557 || || | || || || || || | ||||| || | |||||||| || ||| Sbjct 2620 GGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAAACTTACTCA 2561 Query 138558 ATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGT 138617 ||||| || || ||||||| |||||| ||||| ||||| | ||||| ||| |||||| Sbjct 2560 ATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCTAACAAGCGT 2501 Query 138618 TGGCTTCACTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGT 138677 ||| | |||||||| ||||| || |||||||| | ||| || |||| ||| | | ||| Sbjct 2500 TGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGTGCTCTAGGT 2441 Query 138678 ATTATTGGTCTTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCA 138737 || ||||| | ||||||||||| || || ||||| |||||||| |||||||| ||||| Sbjct 2440 GTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAAATCCGTGCT 2381 Query 138738 GCAGAAGATCCTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTG 138797 || ||||| ||||| ||||| || ||||| || || ||||| ||||| || |||||| | Sbjct 2380 GCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAACGAAGGTATC 2321 Query 138798 CGTGCCTGGATGGCTCCTGTGGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTA 138857 ||||| ||||||||| | || |||||||||||| | || || |||||||||||| Sbjct 2320 CGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCTGAAGAAGTA 2261 Query 138858 TTGCCAAGAGGCAACGCTCT 138877 || || | || |||||||| Sbjct 2260 TTACCGCGTGGTAACGCTCT 2241 Score = 244 bits (270), Expect = 1e-59 Identities = 357/505 (71%), Gaps = 0/505 (0%) Strand=Plus/Minus Query 137861 ATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTC 137920 |||||| |||| | ||||||||| | | ||| || || |||||||| |||||||| Sbjct 4503 ATGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 4444 Query 137921 TGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAAC 137980 || || ||||||| || |||||| || || || ||||| ||| | ||||| ||||| Sbjct 4443 AGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAAC 4384 Query 137981 GTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTT 138040 || || ||| ||||| || || || || || || ||| | ||||| ||| || Sbjct 4383 TTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 4324 Query 138041 CCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTG 138100 | | || |||||||| || || ||||| | ||||| || |||||||| | |||| Sbjct 4323 CTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTG 4264 Query 138101 GGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTT 138160 |||||| || ||||||| || || || |||| |||||||| || | ||| | || Sbjct 4263 GGGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATT 4204 Query 138161 TGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTC 138220 || || | ||||| || ||| | ||||| || ||| | | |||||||| || | Sbjct 4203 CGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGC 4144 Query 138221 TCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTT 138280 |||| ||| | | ||||| || ||||| || || ||||| | || || |||| || Sbjct 4143 TCGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATT 4084 Query 138281 CGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTT 138340 || || ||||| || || || || |||||||| |||||||||||||||| ||| Sbjct 4083 TGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTT 4024 Query 138341 TGGTGTGGCAGCAATCTTCCGATTC 138365 |||||| || ||||||||||| ||| Sbjct 4023 TGGTGTAGCTGCAATCTTCCGTTTC 3999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627913916256000