Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq6015 708 0.0 seq3788 241 1e-58 >seq6015 Length=1491 Score = 708 bits (784), Expect = 0.0 Identities = 756/991 (76%), Gaps = 8/991 (1%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 |||||||||||| | || || ||||| || || | ||| | |||||||| ||||| | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| |||||||| ||||| | | ||||| | || |||||||||||||| Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAACATCAGTATTCATCATCGCTTTCATCGCTGCTCCG 1231 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 170844 ||||| || ||||| || ||| | || ||||| | |||||| ||||| || |||||||| Sbjct 1230 CCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTT-TACGGTAACAA 1172 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 ||||||| | ||||||||| | ||| |||| ||||| || || ||||||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 |||||||| || ||| | ||||||||||| |||||||| ||||||||||| || | | Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 170965 TTTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATCATACA 171023 || ||||||||| | || | | |||| ||||||||| | |||||||| |||| | | Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGC-TACATGGGTCGTGAGTGGGAATTATCTTTCC 993 Query 171024 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 171083 | |||| ||| | || ||||| ||| || |||||||| || ||| ||||||| | Sbjct 992 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCG 933 Query 171084 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 171143 | |||||| | || || ||| | || || ||||||||||| ||||||||||| |||||| Sbjct 932 CTGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTA 873 Query 171144 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 171203 || ||||| |||||||||||| |||| |||||||| || |||||||| || ||||||| Sbjct 872 TCAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACC 813 Query 171204 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 171263 | ||||| ||| |||||| || ||| | || |||||| | ||| ||||||||||| Sbjct 812 CATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACG 753 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCA--AAACTA 171321 |||| |||| || || || ||||| | || |||||||| ||| || ||| ||| | Sbjct 752 GTTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAAC--GAATCAGCTAACGA 695 Query 171322 CGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTT 171381 || || || || ||||||||||||||||| ||||| || || ||||| || ||||| Sbjct 694 AGGTTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTT 635 Query 171382 CGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCT 171441 |||| | ||||||||||| || || ||||||||||||||||||||||||||||||||||| Sbjct 634 CGGTCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCT 575 Query 171442 CGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATT 171501 |||| | || || || || | ||||| || || | ||| | | || ||||| || Sbjct 574 AGCTGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTT 515 Query 171502 CAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACC 171561 |||||||||||| |||||||||||||||||||||||||| || | || | || Sbjct 514 CAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAA 455 Query 171562 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 171621 || |||| ||| | | ||| | || ||| | || |||||||| ||||| || | || Sbjct 454 CACTTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAA 395 Query 171622 TGCACACAACTTCCCACTAGACCTAGCATCT 171652 || ||||||||||| |||||| |||| ||| Sbjct 394 CGCTCACAACTTCCCTCTAGACTTAGCTTCT 364 >seq3788 Length=5474 Score = 241 bits (266), Expect = 1e-58 Identities = 371/533 (70%), Gaps = 21/533 (4%) Strand=Plus/Minus Query 172300 TATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAG 172359 |||| | || |||||||| || || || || ||||| || |||||||||||||| | Sbjct 2748 TATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCTG 2689 Query 172360 GTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGT 172419 || | | ||||| || ||| ||||||| || || ||||| || ||| | |||||||| | Sbjct 2688 GTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTAT 2629 Query 172420 ATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCG 172479 ||||| ||| ||| ||| || ||| | || ||| Sbjct 2628 TCGAAGATGG------------TGACGGTG---------CTAACACGTTCCGTGCCTTCA 2590 Query 172480 ATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGA 172539 | |||||||||| ||||||||||| ||| | || || ||| | ||||||||||| | Sbjct 2589 ACCCTACACAGGCTGAAGAAACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAA 2530 Query 172540 TATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTG 172599 | |||||| |||| || || ||||| | | ||||||||| | ||| | || || || | Sbjct 2529 TTTTTGGTGTAGCTTTCTCTAACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCG 2470 Query 172600 TCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCAT 172659 | | ||| | |||| || ||||| | || ||| | || |||||||| | || | Sbjct 2469 TGACGGGGCTTTGGATGAGTGCTCTAGGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTT 2410 Query 172660 ACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACA 172719 | ||||| ||||| ||||| || | || || |||||||| ||||| ||||| ||||| | Sbjct 2409 ATGACTTCGTATCACAAGAAATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATA 2350 Query 172720 CTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCC 172779 |||| ||||| |||||||| |||||||| | || |||||| | | || ||||| | Sbjct 2349 CTAAAAACATCCTTCTTAACGAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTC 2290 Query 172780 ATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 | || | || ||||| |||||||| || || || || ||||| |||||| Sbjct 2289 ACGAACGTCTAGTATTCCCTGAAGAAGTATTACCGCGTGGTAACGCTCTATAA 2237 Score = 226 bits (250), Expect = 3e-54 Identities = 352/503 (70%), Gaps = 0/503 (0%) Strand=Plus/Minus Query 171791 ATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 171850 ||||||||| | |||||| ||| || ||| ||||||||||| | || ||||| Sbjct 4503 ATGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 4444 Query 171851 TGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 171910 ||| | |||||||| |||||||||||| | ||| | || |||||||| || || || Sbjct 4443 AGGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAAC 4384 Query 171911 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTT 171970 |||||| || |||||||| ||||||||| | || | || || | || || ||||| Sbjct 4383 TTTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 4324 Query 171971 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATG 172030 ||||||||||| ||||||||||||| | ||||| || ||| | || | || Sbjct 4323 CTTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTG 4264 Query 172031 GGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTT 172090 ||| || || || ||||| || | ||| |||| |||| | ||||| ||||| || Sbjct 4263 GGGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATT 4204 Query 172091 TGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGC 172150 ||||| ||||| || | ||| | | || || || ||| | ||||||||||| ||||| Sbjct 4203 CGTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGC 4144 Query 172151 AGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATT 172210 | || ||||||| || ||||| | || |||||||| ||| | ||||| Sbjct 4143 TCGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATT 4084 Query 172211 CACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATT 172270 | || ||||| || ||||||||||| |||||||||| || ||| || Sbjct 4083 TGTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTT 4024 Query 172271 TGGTGTCGCAGCAATCTTTCGTT 172293 |||||| || |||||||| |||| Sbjct 4023 TGGTGTAGCTGCAATCTTCCGTT 4001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570219685599600