Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3574 118 1e-21 seq32 102 1e-16 seq263 91.5 2e-13 >seq3574 Length=6273 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| ||||||||||| |||||||| | || || || |||||||| || ||||| Sbjct 5815 CAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGG 5756 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||||||||| || ||||| || ||||| ||| || || || || ||| Sbjct 5755 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAAAAG 5696 Query 33424 ATTCCTTCTACTGCAGCAAAGGC 33446 || || || || || || ||||| Sbjct 5695 ATGCCCTCCACGGCCGCGAAGGC 5673 >seq32 Length=161680 Score = 102 bits (112), Expect = 1e-16 Identities = 238/357 (67%), Gaps = 8/357 (2%) Strand=Plus/Plus Query 33301 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTG 33360 || || || || |||||||| ||||||||||| | | || || || || ||||| ||| Sbjct 59405 AAGCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTTGAAAAGGTG 59464 Query 33361 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAG 33420 || || ||||| || || || ||||| ||||| || |||| |||||| || || || Sbjct 59465 AGCCCCGGCATGAGCCCGCGTTTTTTGAGCCAGAAGATGGCGCAGAATGAGCCCGAGAAA 59524 Query 33421 AAGATTCCTTCTACTGCAGCAAA-GGCAATAAGTCTCTCTC---CATAACCGGCGCTGTC 33476 ||||| || || || || ||||| | || ||| || | || | ||| || | Sbjct 59525 AAGATGCCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAACACATCCGACG----C 59580 Query 33477 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 33536 | |||||||| ||||| |||||| | | ||||| ||||| || || ||||| Sbjct 59581 CTCGATCCACTTCAACGCCCATGTGGCCTTTTGGGTCACACATGGCATTGTCTCAATGGC 59640 Query 33537 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 33596 ||||||| || ||| || | ||| || | || || | || || || Sbjct 59641 GCGAAAGAGACGGTCTTTCTCGTGGACATCCTTGATGTAGTGGTCCAACAGCAGGGAGTA 59700 Query 33597 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 | | || || | ||| ||||| || ||||| |||||||| ||||| | ||||| Sbjct 59701 CGTCTCGCCGTGGACGTTCTCAATTGCGATCTGGAATCCGTAAAAACAACGCGCCTC 59757 >seq263 Length=80451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || ||||||||||| |||||||| | || || ||| |||||||||||| || Sbjct 27941 CAGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGCTGATGAGTACGTTGGAAAACGACAGG 27882 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 33401 |||||||| ||||| ||||| || ||||| || ||||| Sbjct 27881 CCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGA 27844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622893548672400