Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq222 342 1e-88 seq34 102 2e-16 seq32 96.9 9e-15 >seq222 Length=84561 Score = 342 bits (378), Expect = 1e-88 Identities = 653/951 (69%), Gaps = 27/951 (3%) Strand=Plus/Minus Query 363378 CGAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATG 363436 |||||| || |||||| || | ||||| |||| || ||||| || || || | Sbjct 75316 CGAGTACGACTATTTTGGGTTC-AAGACACTGGAACGCTCGTACCTGCTGCGGATAAACG 75258 Query 363437 GTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCC 363496 | || || ||||| ||||||||||| ||| | ||||| || || | || ||||| | Sbjct 75257 GAGAGATCGTTGAGCGCCCGCAGCACATGCTCATGCGCGTCGCGCTGGGCATCCACGCGC 75198 Query 363497 CGGATGTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGTATTCACG 363552 || | || ||| || || || ||| | || || || || ||| |||||| Sbjct 75197 ACGACCTGGAGAGCGCCATCGAGACGTATCACCTGATGTCGGAGCGC-CGT---TTCACG 75142 Query 363553 CACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTT 363612 ||||| |||| || | | ||| |||| || | || |||||| || ||||| Sbjct 75141 CACGCGTCGCCCACGCTCTTCAACTCTGGCACGCCGCGCCCTCAGATGAGCTCGTGCTTC 75082 Query 363613 CTTCTAAAAATGAAGGACGATTCC---------ATCGAGGGTATCTTTGACACACTTAAG 363663 || | | ||||||| |||| | |||||||| || | |||||| || || Sbjct 75081 CTGGTGCACATGAAGGGCGATGGCTGCGACAGCATCGAGGGCATTTATGACACGCTCAAA 75022 Query 363664 AATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGT 363723 | || || | ||||||||||| || || || || || | || || ||| | | ||| Sbjct 75021 GAGTGCGCGGTCATTTCCAAGAACGCGGGTGGCATCGGCCTGTCCATTCACGACATCCGT 74962 Query 363724 GC-ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCT 363782 || || | | || || |||||||| || || || || | || |||||||| Sbjct 74961 GCCACCGG-CTCCTATATCCGCGGCACCAACGGCACGTCCAACGGCATCGTACCCATGCT 74903 Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842 || || ||| || | || ||| | ||||| |||||||| || ||||||||||| ||||| Sbjct 74902 GCGCGTCTTTAACGACACGGCGCGTTACGTGGACCAGGGGGGCGGAAAGCGCAAGGGGGC 74843 Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 |||||| || || || ||||| || || || |||||||| || | ||||| || || Sbjct 74842 GTTTGCCATTTACCTGGAGCCCTGGCACGCTGACATTTTTGACTTCATCGAGCTGCGCAA 74783 Query 363903 AAAC-ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961 ||| |||||||| ||||| | ||| || || || ||||| ||| | ||||| | Sbjct 74782 GAACCACGGGAAA-GAGGAGTCGCGCGCGCGGGACTTGTTCCTTGCCATGTGGGTCAACG 74724 Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 ||| || ||| |||| || ||||| | | | | ||||| ||||||||||| |||| Sbjct 74723 ACCTCTTCATGCAGCGGGTCGAGGCGGATGCGGAGTGGTCGCTCTTTTGCCCCAACGAGG 74664 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTT--GCTCTATACGAAAAGTATGA 364079 || || || | || ||||| ||||| | || |||||| ||| || || Sbjct 74663 CGCCTGGACTAGCGGACTGCTGGGGCGACGAGTTTGAGCGGCTCTACACGCGC--TACGA 74606 Query 364080 ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 ||||| || || ||||| || | ||| ||| |||| |||||||||||| |||| Sbjct 74605 GCGCGAGGGGCGTGCGCGCAAGACGATCCGCGCCCAGCAGCTGTGGTTTGCCATCCTGGA 74546 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 | ||||||| ||||| || || || || ||| | ||||| ||||| |||||||||||| Sbjct 74545 TGCGCAGATCGAGACGGGTACCCCGTACATGCTATACAAGGATTCCTGCAACCGCAAGAG 74486 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 ||||||||| || || || || || || |||||||| || || ||||| | || || Sbjct 74485 CAACCAGCAACATCTGGGCACCATCAAGTGCAGCAACCTCTGCACGGAGATCCTCGAGTA 74426 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 |||| ||||||||||| || || || ||||| ||||| || |||||||| Sbjct 74425 CACCAGCCCCGACGAGACGGCGGTCTGCAACCTGGCGTCCATTGCGCTTCC 74375 >seq34 Length=156822 Score = 102 bits (112), Expect = 2e-16 Identities = 199/293 (68%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 363974 AGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTT 364033 |||||||||||| | | | ||| || || ||||| |||| ||| | || || Sbjct 81178 AGCGCGTGGAGGAGGACCGGGAGTGGAGCCTGTTCTGCCCCAACGAGTGTGCCGGCCTGG 81119 Query 364034 CCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGG 364093 |||| ||||| || | | | | || ||| | ||||| || || ||||| |||| Sbjct 81118 CCGACAGCTGGGGCGAGAAGTTCGAGGAGCTGTACAACAAGTACGAGTCCGAGGGCAAGG 81059 Query 364094 CTCGTAAG---ACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150 | ||| | | ||| ||| |||| ||||| |||||| |||| | ||| | | Sbjct 81058 C---CAAGCGCGTGGTGCGCGCGCAGCAGCTGTGGTTCGCCATCCTGGAGGCCCAGGTGG 81002 Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGC 364210 |||| || | ||||| ||| ||||||| || | |||||| ||||| |||||||||| Sbjct 81001 AGACGGGCAACCCCTACATGCTGTACAAGGACGCCTGCAACGGCAAGAGCAACCAGCAGA 80942 Query 364211 ACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||| || || || || |||||| || |||||||| || || |||||| Sbjct 80941 ACCTGGGCACCATCAAGTGCTCCAACCTGTGCACCGAGATCATCGAGTACACC 80889 >seq32 Length=161680 Score = 96.9 bits (106), Expect = 9e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 |||||||| | ||| || ||||| || || || || |||| || || ||||| ||||| Sbjct 59550 GCATTTGCAGCGGTCGAGGGCATCTTTTTCTCGGGCTCATTCTGCGCCATCTTCTGGCTC 59491 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 |||||||| | | |||||||| || || |||||||||||| | || || || ||| Sbjct 59490 AAAAAACGCGGGCTCATGCCGGGGCTCACCTTTTCAAATGAGCTCATCTCTCGGGACGAG 59431 Query 22621 GGTCTTCATACCGATTTTGCGTG 22643 ||||| || ||| |||||||| Sbjct 59430 GGTCTACACTGCGACTTTGCGTG 59408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303238542387980