Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq222 219 4e-52 seq34 123 2e-23 seq367 98.7 9e-16 seq3574 89.7 5e-13 seq1357 89.7 5e-13 seq589 82.4 7e-11 >seq222 Length=84561 Score = 219 bits (242), Expect = 4e-52 Identities = 579/872 (66%), Gaps = 24/872 (3%) Strand=Plus/Plus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCG 145684 || || ||||||| || || || |||||||| |||| | | |||| | | |||||| Sbjct 74381 GCAATGGACGCCAGGTTGCAGACCGCCGTCTCGTCGGGGCTGGTGTACTCGAGGATCTCC 74440 Query 145685 GCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC 145744 | ||| | ||||| || |||||||| ||||||| |||||| || || || | |||||| Sbjct 74441 GTGCAGAGGTTGCTGCACTTGATGGTGCCCAGATGTTGCTGGTTGCTCTTGCGGTTGCAG 74500 Query 145745 GCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATA--AAAC 145802 | |||||||| ||||||||||| || ||||| | ||||| |||| ||| |||| Sbjct 74501 GAATCCTTGTATAGCATGTACGGGGTACCCGTCTCGATCTGCGCATCCAGGATGGCAAAC 74560 Query 145803 GGTGCAAGTCCTGCGCACGCACCTGCT-GCTGGTAGCGGCCCTCTTCTTCGTATTTCCTG 145861 || | ||| || || | | || || | | || ||||| ||||| | || Sbjct 74561 CA--CAGCTGCTGGGCGCGGATCGTCTTGCGCGCA-CGCCCCTCGCGCTCGTAGCGCGTG 74617 Query 145862 TAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACAC 145921 |||||| ||||||| || || |||| || | || || || || |||||| || Sbjct 74618 TAGAGCCGCTCAAACTCGTCGCCCCAGCAGTCCGCTAGTCCAGGCGCCTCGTTGGGGCAA 74677 Query 145922 ATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGC 145981 | |||||||| | | | || | ||| |||| ||| || | || ||||||| Sbjct 74678 AAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGCATGAAGAGGTCGTTGACCCACATG 74737 Query 145982 GCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTTTC--GCTTCAAATTAA 146039 || | |||||| ||||| | ||||| ||| || ||| || || | | Sbjct 74738 GCAAGGAACAAGTCCCGCGCGCGCGACTCCTCTTT-CCCGTGGTTCTTGCG-CAGCTCGA 74795 Query 146040 GCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTT 146099 | | | ||||| |||||||| || || | || | ||| | || || || || | Sbjct 74796 TGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTAAATGGCAAACGCCCCCTTGCGCT 74855 Query 146100 T---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGA 146156 | ||| ||||||||||||| ||| || ||| |||||||||||||| |||||| ||| Sbjct 74856 TTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTTAAAGACGCGCAGCATGGGTACGA 74915 Query 146157 CGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAA 146216 |||| ||| |||||| || | || || |||| || || | | |||| Sbjct 74916 TGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGGAGCCGGTGGCACGGATGTCGTGAA 74975 Query 146217 CATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGT 146276 || ||||| || || ||| |||||| || | ||||| || |||||| || | Sbjct 74976 TGGACAGGCCGATGCCACCCGCGTTCTTGGAAATGACCGCGCACTCTTTGAGCGTGTCAT 75035 Query 146277 AGATGCCGTCAATGCTATCG----CTTCG-----AATGCCGAGCAGAAAGCACGAGCACA 146327 | ||||| || ||||| ||| | ||| ||| | ||| |||||||||| || Sbjct 75036 AAATGCCCTCGATGCTGTCGCAGCCATCGCCCTTCATGTGCACCAGGAAGCACGAGCTCA 75095 Query 146328 TCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGT-AAACATTTTT 146386 |||| | |||||| || | ||| | ||| || ||||||||| |||| | Sbjct 75096 TCTGAGGGCGCGGCGTGCCAGAGTTGAAGAGCGTGGGCGACGCGTGCGTGAAACGGCGCT 75155 Query 146387 CGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAA 146446 | | ||||| ||||||| ||||| ||| | | ||||| | || ||||||| Sbjct 75156 CCG-ACATCAGGTGATACGTCTCGATGGCGCTCTCCAGGTCGTGCGCGTGGATGCCCAGC 75214 Query 146447 GCGACGCGCATGAGCATGTGTTGGGGCCGCTC 146478 |||||||||||||||||||| || || ||||| Sbjct 75215 GCGACGCGCATGAGCATGTGCTGCGGGCGCTC 75246 >seq34 Length=156822 Score = 123 bits (136), Expect = 2e-23 Identities = 179/251 (71%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 145678 GATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCT 145737 |||||||| ||||| ||| || |||||||| ||||| || ||||| || || || | Sbjct 80901 GATCTCGGTGCACAGGTTGGAGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCC 80960 Query 145738 GTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT 145797 |||||| ||||||||||| |||||||| || ||| ||||||||||| | ||||| ||| Sbjct 80961 GTTGCAGGCGTCCTTGTACAGCATGTAGGGGTTGCCCGTCTCCACCTGGGCCTCCAGGAT 81020 Query 145798 --AAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTAT 145855 ||| || | |||||| |||||| ||| | |||||| ||||| Sbjct 81021 GGCGAAC--CACAGCTGCTGCGCGCGCACCACGCGCTTGGCCTTGCCCTCGGACTCGTAC 81078 Query 145856 TTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTG 145915 || |||| |||||||| ||| || ||| |||| |||||||| ||||| |||| Sbjct 81079 TTGTTGTACAGCTCCTCGAACTTCTCGCCCCAGCTGTCGGCCAGGCCGGCACACTCGTTG 81138 Query 145916 GGACACATCAG 145926 || || | ||| Sbjct 81139 GGGCAGAACAG 81149 Score = 102 bits (112), Expect = 8e-17 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 145035 TCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCA 145094 ||| ||||| | | || ||| |||||||| |||||||| | || ||| || |||| Sbjct 79583 TCAGGTCGTGCAGCAGGTGCTGGTTGACGACGGTGAACTCGCCCGACAGCACGCGGCGCA 79642 Query 145095 AATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCG 145154 || | ||| || ||| |||| ||||| ||||||| ||||||||||| || ||| Sbjct 79643 CGTAGATGTTGGAGGTGTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGC 79702 Query 145155 TTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTG 145200 | || ||||||||| |||||||| | || ||||||| |||||| Sbjct 79703 TGGCCGTGGGCATGGGCGCCACCAGCAGCGAGTTGCGCACGCCGTG 79748 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 146266 GAGCGTCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGAGCA 146325 |||||| |||||||||||||||||||| || | |||| ||||| ||||| || Sbjct 82098 GAGCGTGTCGTAGATGCCGTCAATGCTGTCCTCGGGCATGCACAGCAGGAAGCAGCTGCT 82157 Query 146326 CATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAA-CATTT 146384 |||||||| | |||||| || || ||||| ||| || ||||||||||| || Sbjct 82158 CATCTGCGGCCGCGGCGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGCGTAAACCAGCG 82217 Query 146385 TTCGGCTCATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCA 146444 || |||||| | || || |||| ||| | | | |||| | || ||||||| Sbjct 82218 CTC-GCTCATGGCGTGGTAGGTGCCGATGGCGCCCTCCAGGTCGCCCTTGTGGATGCCCA 82276 Query 146445 AAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 || || ||||| |||||||| || ||||||||| Sbjct 82277 GCGCCACTCGCATAAGCATGTGCTGCGGCCGCTCC 82311 >seq367 Length=69066 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||| |||||| ||||||||||| || Sbjct 68805 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGC 68864 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 68865 CAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 68924 Query 131127 GATTCCT 131133 || ||| Sbjct 68925 AATGCCT 68931 >seq3574 Length=6273 Score = 89.7 bits (98), Expect = 5e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 ||| ||||||| | |||||||| ||| ||||||||| ||||||| || ||| || Sbjct 5655 TTCTCCGAGCGCCTCGTGGCCTTCGCGGCCGTGGAGGGCATCTTTTTCTCCGGCTCCTTC 5714 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 | ||||||| | |||| | ||| ||||||||||||| || || ||||||| Sbjct 5715 TGCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTCACCTTCTCCAACGAG 5774 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 || || ||||||||||||||||| ||||| || || || Sbjct 5775 CTCATCAGCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCT 5818 >seq1357 Length=27981 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| ||||||||||| || | ||||||| |||||| ||||||||||| ||| ||| Sbjct 4168 CCTTCTGAATGTTGTAGTCAGCAAGGGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAGA 4227 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 | | |||||||||||||| ||||||||| Sbjct 4228 TGAGGCGCTGCTGGTCCGGGGGGATTCCT 4256 >seq589 Length=52745 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 131014 CGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTG 131073 |||| |||||||| | |||| || |||||| || |||||||| ||| | ||| Sbjct 25598 CGCAGGCGCAGCACCAGGTGTAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTG 25539 Query 131074 CGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 ||| |||||| || |||||||| || |||| | |||||||||||||| ||||| ||| Sbjct 25538 CGCCCGTCCTCGAGTTGCTTGCCAGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATGCCT 25479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471972147897600