Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4919 116 2e-21 seq5648 98.7 7e-16 seq2554 91.5 1e-13 >seq4919 Length=2758 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 2611 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 2552 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||||| Sbjct 2551 AGCAATATTTAGCCTTA 2535 >seq5648 Length=1799 Score = 98.7 bits (108), Expect = 7e-16 Identities = 65/72 (90%), Gaps = 5/72 (7%) Strand=Plus/Minus Query 25925 TTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTA 25979 ||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 1799 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 1740 Query 25980 ATTAGATGACGA 25991 |||||||||||| Sbjct 1739 ATTAGATGACGA 1728 >seq2554 Length=12034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 61/68 (90%), Gaps = 5/68 (7%) Strand=Plus/Minus Query 25925 TTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTA 25979 ||||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 12034 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 11975 Query 25980 ATTAGATG 25987 |||||||| Sbjct 11974 ATTAGATG 11967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334919073855590