Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq4919 116 2e-21
seq5648 98.7 7e-16
seq2554 91.5 1e-13
>seq4919
Length=2758
Score = 116 bits (128), Expect = 2e-21
Identities = 72/77 (94%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 2611 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 2552
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||||
Sbjct 2551 AGCAATATTTAGCCTTA 2535
>seq5648
Length=1799
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 5/72 (7%)
Strand=Plus/Minus
Query 25925 TTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTA 25979
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1799 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 1740
Query 25980 ATTAGATGACGA 25991
||||||||||||
Sbjct 1739 ATTAGATGACGA 1728
>seq2554
Length=12034
Score = 91.5 bits (100), Expect = 1e-13
Identities = 61/68 (90%), Gaps = 5/68 (7%)
Strand=Plus/Minus
Query 25925 TTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACTA 25979
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 12034 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 11975
Query 25980 ATTAGATG 25987
||||||||
Sbjct 11974 ATTAGATG 11967
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334919073855590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |