Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq6015 729 0.0 seq3788 372 3e-98 >seq6015 Length=1491 Score = 729 bits (808), Expect = 0.0 Identities = 750/978 (77%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 166054 TTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTG 166113 || || || ||| | || || || | |||||| | || | |||||||| || | | Sbjct 1350 TTTTGTGAGTGGATCACTTCAACTGAAAACCGTTTATACATCGGTTGGTTCGGTGTAATC 1291 Query 166114 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACC 166172 ||||| || ||| | | ||||| ||| || |||||| |||||||| | || || || Sbjct 1290 ATGATCCCTTGTCTTCTTACTGCAAC-ATCAGTATTCATCATCGCTTTCATCGCTGCTCC 1232 Query 166173 TCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAA 166232 || || || |||||||| ||||||||||| ||| | || ||||| | || |||||||| Sbjct 1231 GCCAGTAGACATCGATGGTATCCGTGAGCCAGTATCTGGTTCTCTTCTTTACGGTAACAA 1172 Query 166233 CATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCAT 166292 ||||||| | |||||||| |||| | || ||||| |||||| | |||||||| || || Sbjct 1171 CATCATCACAGGTGCTGTAATCCCAACTTCTAACGCTATTGGTTTACACTTCTACCCAAT 1112 Query 166293 CTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGT 166352 |||||||| || | ||||| || ||| | || ||||||||||||| ||| || | || Sbjct 1111 TTGGGAAGCTGCTACTCTTGACGAGTGGTTATACAACGGTGGTCCTTACCAACTAATCGT 1052 Query 166353 CTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCG 166412 | |||||||| | || | || ||||||||||||||| |||||||| |||| ||| Sbjct 1051 TTGTCACTTCCTTTTAGGTGTATACTGCTACATGGGTCGTGAGTGGGAATTATCTTTCCG 992 Query 166413 CCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGC 166472 | ||||||||||| ||||| || || ||||| || || || || ||||| ||| Sbjct 991 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCTCCAGTAGCTGCAGCTAGCGC 932 Query 166473 AGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTAT 166532 || ||| | || || || | || |||||||| ||||| || | ||||| | ||||| Sbjct 931 TGTATTCTTAGTTTACCCAATTGGCCAAGGTTCATTCTCAGATGGTATGCCTTTAGGTAT 872 Query 166533 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCC 166592 ||| || || ||||||| |||| | || |||||||| |||||||||||||| |||||||| Sbjct 871 CAGCGGTACTTTCAACTTCATGATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 812 Query 166593 CTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGG 166652 ||||| ||| | ||||| || |||||||| ||||| ||| | ||||| ||||||||||| Sbjct 811 ATTCCACATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCTGCAATGCACGG 752 Query 166653 CAGTCTCGTTACTTCCTCGCTCGTCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGG 166712 | |||||||| ||| | ||||||| || ||||||| || || ||| | || Sbjct 751 TTCATTAGTTACTTCATCGTTAATCCGTGAAACAACTGAAAACGAATCAGCTAACGAAGG 692 Query 166713 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGG 166772 |||| ||||||||||||||||| || ||||||||||| || ||||| ||||||||||| Sbjct 691 TTACCGTTTTGGTCAAGAAGAAGAAACATACAACATCGTAGCAGCTCACGGTTACTTCGG 632 Query 166773 TCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGC 166832 ||| | ||||||||||||||||| |||||||||||||| || | ||||||||||| || Sbjct 631 TCGTTTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCATTACACTTCTTCCTAGC 572 Query 166833 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAA 166892 || ||||| ||| ||||||| ||||| || ||| | ||| || || ||||| ||||| Sbjct 571 TGCTTGGCCAGTTATCGGTATTTGGTTCACAGCTTTAGGTCTTTCAACTATGGCTTTCAA 512 Query 166893 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 166952 ||| |||||||||||||||||||| || | | || || |||||||| | ||||| Sbjct 511 CCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGACTCACAAGGTCGTGTATTAAACAC 452 Query 166953 TTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGC 167012 ||||||||| || ||||||||||| | |||||||||||||||||||||||||| || Sbjct 451 TTGGGCAGACATCATCAACCGTGCTAACTTAGGTATGGAAGTAATGCACGAGCGTAACGC 392 Query 167013 TCACAACTTCCCTCTGGA 167030 ||||||||||||||| || Sbjct 391 TCACAACTTCCCTCTAGA 374 >seq3788 Length=5474 Score = 372 bits (412), Expect = 3e-98 Identities = 388/509 (76%), Gaps = 0/509 (0%) Strand=Plus/Minus Query 167804 CTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCT 167863 ||||| | || ||||||||||||||||| || ||||| ||||| |||||||| || ||| Sbjct 2749 CTATTTTTCCAAGGTTTCCATAACTGGACACTGAACCCATTCCACATGATGGGTGTAGCT 2690 Query 167864 GGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTG 167923 ||| | |||| ||||| || | | ||| || || |||| ||| ||||| || || | Sbjct 2689 GGTGTTTTAGGTGGTGCTTTATTATGTGCTATTCACGGTGCTACTGTAGAAAACACATTA 2630 Query 167924 TATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAA 167983 | ||||||||||| || ||||| ||| || || | | || |||| || ||| Sbjct 2629 TTCGAAGATGGTGACGGTGCTAACACGTTCCGTGCCTTCAACCCTACACAGGCTGAAGAA 2570 Query 167984 ACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGC 168043 ||||| || ||||| || || ||||| |||||||| |||||||||||| | |||||| Sbjct 2569 ACTTACTCAATGGTAACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTTCTCT 2510 Query 168044 AATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGT 168103 || ||||||||||| |||||||| |||||||| ||||| || | ||| ||||||| ||| Sbjct 2509 AACAAGCGTTGGTTACACTTCTTCATGCTTTTAGTTCCCGTGACGGGGCTTTGGATGAGT 2450 Query 168104 TCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAA 168163 || | ||| | | ||| | || ||||| ||||||||||||||||| || || || ||| Sbjct 2449 GCTCTAGGTGTTGTTGGTTTAGCTCTTAACCTTCGTGCTTATGACTTCGTATCACAAGAA 2390 Query 168164 GTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAAT 168223 | | || || || || || ||||| |||||||||||||| ||||||||||| || || Sbjct 2389 ATCCGTGCTGCTGAAGACCCTGAGTTCGAAACTTTCTATACTAAAAACATCCTTCTTAAC 2330 Query 168224 GAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCA 168283 ||||| ||||||| ||||||||| | ||||||||| || ||| | |||||||| Sbjct 2329 GAAGGTATCCGTGCTTGGATGGCTGCGCAAGACCAACCTCACGAACGTCTAGTATTCCCT 2270 Query 168284 GAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 ||||||||||| || | || |||||||| Sbjct 2269 GAAGAAGTATTACCGCGTGGTAACGCTCT 2241 Score = 206 bits (228), Expect = 3e-48 Identities = 344/497 (69%), Gaps = 0/497 (0%) Strand=Plus/Minus Query 167297 TGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 167356 |||||||||| | ||||||||||| | ||||| || || ||||| || ||||| Sbjct 4502 TGGTTTGATGACGCTGATGACTGGCTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 4443 Query 167357 GGATTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACG 167416 || ||| | ||||| || |||||| | ||| | ||||| ||| | ||||| || || Sbjct 4442 GGTTTATTACTTTTCCCTTGTGCTTACTTTGCACTAGGTGGTTGGTTAACTGGTACAACT 4383 Query 167417 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTTT 167476 || || || |||||||| || || || || || |||| | || ||| ||| || Sbjct 4382 TTCGTAACATCATGGTATACACATGGTTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 4323 Query 167477 CTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGG 167536 | || ||||| || ||||| ||||| || ||||| || |||||||| | ||||| Sbjct 4322 TTAACTGCAGCTGTATCAACACCTGCAAACAGTATGGCACACTCTCTTCTATTTGTTTGG 4263 Query 167537 GGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTT 167596 ||||| || |||| || || |||| | ||||| || ||||| || | ||||| || Sbjct 4262 GGTCCAGAAGCTCAAGGTGACTTCACACGTTGGTGTCAACTTGGTGGTTTATGGGCATTC 4203 Query 167597 GTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAGT 167656 || || | ||||| || ||| | | || || |||||| | | || ||||| || | Sbjct 4202 GTAGCTTTACACGGTGCTTTTTCATTAATTGGCTTTATGTTAAGACAGTTTGAAATTGCT 4143 Query 167657 AGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTT 167716 | |||| | ||||| || || || |||||||| || | || ||| |||| ||| Sbjct 4142 CGTTCAGTAAACTTACGTCCATATAACGCTATTGCTTTCTCAGCGCCAATTTCTGTATTT 4083 Query 167717 GTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTT 167776 || ||||||| || || || || | || || || ||||||||||||| || ||| Sbjct 4082 GTTGCTGTTTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCTCCTAGCTTT 4023 Query 167777 GGTGTTGCAGCGATATT 167793 ||||| || || || || Sbjct 4022 GGTGTAGCTGCAATCTT 4006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567183147144000