Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq32 116 4e-21 >seq32 Length=161680 Score = 116 bits (128), Expect = 4e-21 Identities = 363/557 (65%), Gaps = 15/557 (3%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 ||||| | ||||||||||||||| |||| ||| ||||| || || || | |||||| Sbjct 59396 TTGTAGAGGAAGCACGCAAAGTCGCAGTGTAGACCCTCGTCCCGAGAGATGAGCTCATTT 59455 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 || || | || || | || || ||||| |||||||| || | || ||| || | Sbjct 59456 GAAAAGGTGAGCCCCGGCATGAGCCCGCGTTTTTTGAGCCAGAAGA-TGGCGCAGAATGA 59514 Query 93200 -CCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGC-AAAATTTG 93257 || || ||||| || || || || |||||||||||||| | || ||| || | | Sbjct 59515 GCCCGAGAAAAAGATGCCCTCGACCGCTGCAAATGCCACCAAGCGCCTGGCGAACACATC 59574 Query 93258 CGGAATTACTGCT-GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 || || || |||||| || || ||||| ||| |||| | | ||| || | | Sbjct 59575 CG-----ACGCCTCGATCCACTTCAACGCCCATGTGGCCTTTTGGGTCACACATGGCATT 59629 Query 93317 GTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 || || || ||| ||| || ||| ||||| ||| ||||| || | Sbjct 59630 GTCTCAATGGCGCGAAAGAGACGGTCTTTCTCGTGGACATCCTTGATGTAGTGGTCCAAC 59689 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 | ||| || ||| | || ||||| ||||| ||||| || ||||||||||| ||||| Sbjct 59690 AGCAGGGAGTACGTCTCGCCGTGGACGTTCTCAATTGCGATCTGGAATCCGTAAAAACAA 59749 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 | || || | || ||||| || | || | | | | || || || ||||| || Sbjct 59750 CGCGCCTCTGGGAGTTGCACCTCGCGCATGAAGCGCGATGCCAGGTTCTCGTTGACGATG 59809 Query 93497 CCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTA 93556 ||||| || | ||||| ||||| | | ||||| | ||| || | ||| || Sbjct 59810 CCATCAGACGTAGCAAAGAAAGCGAGCACGTGCTTGAGAAAGTGCTGCTCGTCGCTGCGC 59869 Query 93557 AGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGAT 93616 |||| ||||| | | || | ||| ||||| | || ||| ||||||| || Sbjct 59870 AGCTCGTCCCACTTG------TCCTGTGACAGATCAATCTCCTCGGCAGTCCAGAAGCTG 59923 Query 93617 GCTTCTGCTTTTTTGTA 93633 |||| || |||||||| Sbjct 59924 GCTTGGGCCTTTTTGTA 59940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556812840363600