Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq222 116 8e-21 seq2794 109 1e-18 seq5217 107 4e-18 seq4354 107 4e-18 seq4349 107 4e-18 seq4011 107 4e-18 seq2562 107 4e-18 seq1785 107 4e-18 seq1593 102 2e-16 seq675 98.7 2e-15 seq3574 96.9 7e-15 seq32 91.5 3e-13 seq31 86.0 1e-11 >seq222 Length=84561 Score = 116 bits (128), Expect = 8e-21 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 182488 CCGGTGAACTGCAGCTGCTCGATCAGGTACTCGTGGGGCAGCTGGGCGAAGCGGGTGCGC 182547 ||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |||| Sbjct 62702 CCGGTGAACTGCAGCTGCTCGATGAGGTACTCGTGGGAGACCTGGGCGAAGCGGCGGCGC 62761 Query 182548 TCCTGGGTGTCCAGGAAGATGTAGTCGAC 182576 || | |||||| ||| ||||||||||||| Sbjct 62762 TCGTCGGTGTCGAGGTAGATGTAGTCGAC 62790 Score = 93.3 bits (102), Expect = 9e-14 Identities = 235/354 (66%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 294151 AGGCCAGGGCACTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCTTC 294210 || ||||| ||||| ||| || || ||||||| ||||| | ||| || |||| | Sbjct 74654 AGTCCAGGCGCCTCGTTGGGGCAAAAGAGCGACCACTCCGCATCCGCCTCGACCCGCTGC 74713 Query 294211 ATGAATAGATCATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCGCAGGCT-CTCCTC 294269 ||||| || || ||||||||||| || ||||||| || |||||| | || ||| | Sbjct 74714 ATGAAGAGGTCGTTGACCCACATGGCAAGGAACAAGTCCCGCGCGCGC-GACTCCTCTTT 74772 Query 294270 ACCTTGATTACGACGGAGGAGCAGGAAGTCCATGATGTCGGGATGATGGGGTTCCAGATA 294329 || || || || || | |||||| | ||||| | || ||| ||||| || Sbjct 74773 CCCGTGGTTCTTGCGCAGCTCGATGAAGTCAAAAATGTCAGCGTGCCAGGGCTCCAGGTA 74832 Query 294330 CACAGCAAAGGACCCCTT---CCTGCGTCCCCCCTGGTTGGCGTAGGCAGATGTGGTGTC 294386 | ||||| | |||||| | | | |||||||||| |||| | ||| || Sbjct 74833 AATGGCAAACGCCCCCTTGCGCTTTCCGCCCCCCTGGTCCACGTAACGCGCCGTGTCGTT 74892 Query 294387 AAACACCTTCAGCATAGGCACGATGCCATCGGACTCACCATTGGTTCCGCGAATCTCAGC 294446 ||| || |||||| || |||||||| | |||| || ||||| ||||| || | | Sbjct 74893 AAAGACGCGCAGCATGGGTACGATGCCGTTGGACGTGCCGTTGGTGCCGCGGATATAGGA 74952 Query 294447 CCCGCGCCCGCGAATGTCGCTCATGTGGAGACCAATGCCACCGCCATACTTGGA 294500 ||| | || |||||| ||| || || |||||||| | | |||||| Sbjct 74953 GCCGGTGGCACGGATGTCGTGAATGGACAGGCCGATGCCACCCGCGTTCTTGGA 75006 Score = 84.2 bits (92), Expect = 4e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 182670 CTTCACCTCGTGGTACTGGAGGGCAATCAGGGGGAGGGCCAGGCCGGGGGTCTGGTTGAA 182729 |||||||||||||||||||||||| || ||||| || |||||||||||| | || ||| Sbjct 62917 CTTCACCTCGTGGTACTGGAGGGCGATGAGGGGCAGCGCCAGGCCGGGGTTGCGGCAGAA 62976 Query 182730 GAAGAAGATCAGGGGCACGTA 182750 |||||| |||||| | ||| Sbjct 62977 GAAGAACTCCAGGGGGATGTA 62997 >seq2794 Length=10408 Score = 109 bits (120), Expect = 1e-18 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 10102 AGCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10043 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 10042 CCCCACATTGGGC 10030 >seq5217 Length=2299 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1622 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1563 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 1562 CCCACATTGGGC 1551 >seq4354 Length=3902 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 529 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 470 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 469 CCCACATTGGGC 458 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 3598 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 3539 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 3538 CCCACATTGGGC 3527 >seq4349 Length=3913 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 136 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 195 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 196 CCCACATTGGGC 207 >seq4011 Length=4860 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1993 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1934 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 1933 CCCACATTGGGC 1922 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 4703 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4644 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 4643 CCCACATTGGGC 4632 >seq2562 Length=12006 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 185 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 244 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 245 CCCACATTGGGC 256 >seq1785 Length=20350 Score = 107 bits (118), Expect = 4e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 145 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 204 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 205 CCCACATTGGGC 216 >seq1593 Length=23154 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 280713 ATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAA 280772 || |||||||| || || ||||||||||| || | || | | || || |||||| Sbjct 10659 ATCCGCGGTCTGTCGGGTGGCCAGAAGGTGAAGGTCGTGCTGGCCGCGGCCACGTGGCAG 10600 Query 280773 CACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGC 280832 |||| ||| ||||||| || |||||||| || ||||| ||||||||||| || ||| Sbjct 10599 AACCCCCACCTGATCGTGCTGGACGAGCCCACAAACTACCTGGACCGCGACTCGCTCGGC 10540 Query 280833 GCTCTGAGTGCTGCTCTGGACACATTTGGCGGCGGCGTCGTAGTCATTTCTCACAGCACA 280892 || ||| | ||| | | || ||||||||| |||| ||||| || ||| || Sbjct 10539 GCGCTGGCGGGTGCCATCAAGGAGTTCGGCGGCGGCATCGTCGTCATCTCGCACCACAAC 10480 Query 280893 GAATTTGTCAAGTCTGTGTGCTCCGAGATGTGGACAGTGGGGGGAGGCAAG 280943 || || ||| | | ||||| ||| ||||| || || || |||||| Sbjct 10479 GAGTTCGTCTCGGCGCTGTGCAATGAGCGGTGGATCGTCGGCGGCGGCAAG 10429 Score = 87.8 bits (96), Expect = 4e-12 Identities = 120/164 (73%), Gaps = 4/164 (2%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| || |||||||| || || |||| ||||||||||| || Sbjct 13575 GGCGAGGAGCTGTGCAACTGCGAGTTCTCGCTGGCGTACGGTGCCAAGATTCTGCTCAA- 13517 Query 279405 TCTAC-CCGC-CTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAG 279462 | || |||| || | | ||||||||| ||| || || || ||| ||||| || | Sbjct 13516 -CAACGCCGCGCTGCGCCTGAAGCGTGGCCGCCGCTACGGCCTGTGCGGCCCCAACGGCG 13458 Query 279463 CGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTG 279506 ||| ||| || || ||||| |||||||| ||||| ||| || Sbjct 13457 TGGGCAAGTCGACGCTCATGCGTGCCATTGCCAACGGCCAGGTG 13414 >seq675 Length=48933 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 || ||||| |||||||| || ||||| ||| ||||| || || || ||||||||| Sbjct 32818 GGCCTGGAGCCCGAGTTCGGCACGCACTCGGCCATCCGCGGCCTGTCGGGCGGCCAGAAG 32759 Query 280740 GTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAG 280799 ||||| || || | | || || |||||||| ||| || || | || || |||||| Sbjct 32758 GTCAAGCTGGTGCTGGCGGCGGCGCTGTGGCACTGCCCGCATATGCTGGTGCTGGACGAG 32699 Query 280800 CCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 || |||||||| ||||||||||| || ||||| ||| Sbjct 32698 CCCACCAACTACCTGGACCGCGACTCGCTCGGCGCGCTG 32660 >seq3574 Length=6273 Score = 96.9 bits (106), Expect = 7e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 |||||| ||||||||||| ||||||| ||||||||| | ||||| ||||| | || Sbjct 5801 GTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGGCC 5742 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||||||||| | ||| ||||| || ||||| | | ||||| || Sbjct 5741 ACGCTTCTTGAGCCAGAAGATGGAGCAGAAGGAGCCGGAGAAAAAGATGCCCTCCACGGC 5682 Query 251964 CACCCATGCAACAAGGCGCTC 251984 | | | || || |||||||| Sbjct 5681 CGCGAAGGCCACGAGGCGCTC 5661 >seq32 Length=161680 Score = 91.5 bits (100), Expect = 3e-13 Identities = 177/256 (69%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 218528 ACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGG 218587 ||||||||||||| | || || ||| || | | ||| ||||||||||| ||| Sbjct 41023 ACAAGGAGCTCATCCACTTTTCATCGTACGACATCGTGCGCAGCATTCCCAGCGTCCTGG 40964 Query 218588 ATGGCCTCAAGCCATCGCAGCGTAAGATCCTCT-TTGCCGCATTCAAGCGGAACCTGGTT 218646 | || |||||| ||||| || ||| |||| | ||| || |||||||| ||| || Sbjct 40963 ACGGGCTCAAGGTGTCGCAACGCAAGGTCCTGTACTGCTGC-TTCAAGCGCAACTTGACG 40905 Query 218647 CAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCAC 218706 | || || ||||| ||| | | ||||| || || || ||| ||||| ||| Sbjct 40904 GAGGAGATCCGCGTCGCGCAGCTGGCGGGTTACGTCTCGGAGCACGCTGCATACCACCAC 40845 Query 218707 GGTGA-GCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAA 218765 || || ||| || |||| || |||| | || |||| ||||||| |||||| || || Sbjct 40844 GGCGAGGCATCGT-TGCACGGCACCATCATCGGACTGGCGCAGGACTTTGTGGGAAGCAA 40786 Query 218766 CAACATGAACTTGCTG 218781 |||| || || ||||| Sbjct 40785 CAACGTGCACCTGCTG 40770 >seq31 Length=163113 Score = 86.0 bits (94), Expect = 1e-11 Identities = 179/261 (69%), Gaps = 13/261 (5%) Strand=Plus/Plus Query 258868 CGAGACAGTCGACGTTGGTATCCTGTCTAACAACATTGAACGGAAGTTCGGTATCTCTGC 258927 ||| | || |||||| ||| | ||||| |||||||| || || ||||| || || || Sbjct 15168 CGACAAAGCCGACGTGGGTGTACTGTCCAACAACATCGAGCGCAAGTTTGGCATTGGCGC 15227 Query 258928 CTTCTTTGACAAG---ATGTTGGTGTGCGCCCCAGAGATCCGGAATGACCTTGCCATTGA 258984 |||| ||| ||| || || ||| || || |||||| | ||||| || || Sbjct 15228 CTTCAGTGAAAAGTACATCTTTGTG---GCGCCGGAGATCAAGTCGGACCTGCAGATGGA 15284 Query 258985 GCAAGCAGAGTTCCAGTCTATTGTGTCAGGTGAGGAAATCTCGGTTGCCATCAAGCACCA 259044 ||| || ||||| ||| || || || || ||||| || || | | |||||||||| Sbjct 15285 GCAGGCCGAGTTTCAGAGCATGGTCTCTGGCGAGGACATGTCCATCTGCGTCAAGCACCA 15344 Query 259045 GAAGGCATTCA-TGCAGGAGTGGGACGTGCCAATCGTGCTTGCCGGTAATGAGGTGC--- 259100 || ||| | ||| |||||| | |||||| | | | || || || ||||||| Sbjct 15345 GATGGCGCAGACCGCA-GAGTGGAAGGTGCCAGGCATCATGGCGGGCAACGAGGTGCCCG 15403 Query 259101 -CTGGGTGGGCAGACTCTGGC 259120 |||||||| || |||||||| Sbjct 15404 GCTGGGTGGACA-ACTCTGGC 15423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027746064494490