Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq222 140 8e-28 seq4034 102 2e-16 seq589 102 2e-16 seq2489 91.5 3e-13 seq32 87.8 4e-12 >seq222 Length=84561 Score = 140 bits (154), Expect = 8e-28 Identities = 157/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 258065 CGGTGA-TGAGGTCACCGTTGCGAGAGATCTGGGTGCTCACCTTGTTCCCAAATCCGACG 258123 |||||| ||||||| ||||||||| |||| | | ||||||| || || | | Sbjct 63281 CGGTGAATGAGGTCGCCGTTGCGACTGATCGTGCAGGTCACCTTCTTGTTGAAGTCACCC 63340 Query 258124 CTGCCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACG 258183 ||| |||| | |||| || || || ||||| |||||||||| ||| || |||||| Sbjct 63341 GAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGGCGATACACG 63400 Query 258184 GTCTTGAAGAAGGTGATCTGAGGGTTGCCGGTCAGGTACACGTCCTGAGCGCCGTACGCG 258243 |||||| || |||||||| |||||||| |||||||| | ||||||||| ||||| ||| Sbjct 63401 ACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCACCGTAAGCG 63460 Query 258244 ACGAGTTGCGAGAGTCCTCCAGCCATGTT 258272 ||||||||| || || ||| |||| || Sbjct 63461 ACGAGTTGCATTAGACCGCCACCCATTTT 63489 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 246976 CGGTGA-TGAGGTCACCGTTGCGAGAGATCTGGGTGCTCACCTTGTTCCCAAATCCGACG 247034 |||||| ||||||| ||||||||| |||| | | ||||||| || || | | Sbjct 63281 CGGTGAATGAGGTCGCCGTTGCGACTGATCGTGCAGGTCACCTTCTTGTTGAAGTCACCC 63340 Query 247035 CTGCCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACG 247094 ||| |||| | |||| || || || ||||| |||||||||| ||| || |||||| Sbjct 63341 GAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGGCGATACACG 63400 Query 247095 GTCTTGAAGAAGGTGATTTGGGGGTTGCCGGTCAGGTACACGTCCTGAGCGCCGTACGCG 247154 |||||| || ||||| ||||||||||| |||||||| | ||||||||| ||||| ||| Sbjct 63401 ACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCACCGTAAGCG 63460 Query 247155 ACGAGTTGTGAGAGTCCTCCAGCCATTT 247182 |||||||| || || ||| |||||| Sbjct 63461 ACGAGTTGCATTAGACCGCCACCCATTT 63488 >seq4034 Length=4767 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||| || || |||||||| || ||||| ||||| | || |||||| ||||| Sbjct 1752 CCTTCTTTGTCTTGAATTTTCGCCTTGACGTTCTCTATTGTGTCTGACGATTCCACTTCA 1693 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||||||||||||||| || ||||| |||||||| ||||| Sbjct 1692 AGAGTGATCGTCTTCCCGGTAAGGGTCTTAACGAATATTTGCAT 1649 >seq589 Length=52745 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||| |||||||||||||| || || |||||||| | || ||| || ||||| Sbjct 25356 CCTTCTTTGTCCTGGATTTTCGCCTTGACATTTTCTATCGTGTCCGACGACTCCACTTCA 25297 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || ||||| ||||| |||||||||||||| Sbjct 25296 AGAGTAATCGTCTTTCCCGTCAGCGTCTTCACGAATATCTGCAT 25253 >seq2489 Length=12514 Score = 91.5 bits (100), Expect = 3e-13 Identities = 201/298 (67%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 325221 ACTCTGGTTCGATCTTATCGCCGTCGTCGTACATATATTTCAGAAGATTGTCGTCCGTAT 325280 ||||||| ||||| | | ||| || |||| | || || || ||| |||| || | | Sbjct 7604 ACTCTGGCTCGATGCTTTGGCCCTCCTCGTTGAGGTAGTTGAGCAGAATGTCATCGTTCT 7545 Query 325281 CGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTCatatatatatatCGTGCACTCGCGT 325340 || |||| || || || | | |||| | | || || || || || || || Sbjct 7544 CGTTAAAAAGATGCCGCGTGAGCGCCGACAGTCGCGTGTAAATGTAACGCGCGCTGGCAG 7485 Query 325341 GATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGT 325400 || || || |||||||| | | |||||||| || || || | |||||||| Sbjct 7484 CGTCTTTGCCGCCCTGCAAACGTGTGCCGAACTGACCGCTGGGATGCAGCAGGTTGATGT 7425 Query 325401 TATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCT--TC 325458 | ||||| || ||| | |||||||| ||||| || |||| | || || | | || || Sbjct 7424 TGTTGCTGCCCACAAATTCCTGTGCCAGGTTGACAATGG-CGCTAGCCAGGCT-CTGCTC 7367 Query 325459 GCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACG 325516 |||||||||||||||||| || || || || || || | ||| ||||||| |||| Sbjct 7366 GCCATGGTGATAGGCGCTGTGTTCGGCCACATATGCGGACAGCTGGGCAACCTGCACG 7309 >seq32 Length=161680 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/201 (71%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 269115 AAAAGAG-TTCATTTGTGA--CGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCT 269171 ||||||| ||||| ||||| |||| ||| ||| | | ||||| ||||| || | || Sbjct 59324 AAAAGAGCTTCATCTGTGAATCGCTG-CCCGTGT-CGCTCATCGGCATGAACGCGCAGCT 59267 Query 269172 CATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAA 269231 |||| | || || ||||| ||||| ||||| | || | | || || ||||||| Sbjct 59266 CATGGAGCAGTACATCGAGTTCGTCGCTGACAGGCTCCTGGTGTGCCTTGGCAATGAGAA 59207 Query 269232 AGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGAC 269291 || | | | | ||||| |||| || |||||||| || || ||| | |||||||| Sbjct 59206 GGTCTTCCACACCGCCAATCCTTTCGACTGGATGGAACTCATCTCTCTCCAGGGAAAGAC 59147 Query 269292 GAACTTCTTCGAAAAGCGTGT 269312 ||||||||||| ||||| || Sbjct 59146 AAACTTCTTCGAGAAGCGCGT 59126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179550262321420