Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016-
04-26] 6,890 sequences; 122,189,241 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq222 140 7e-28
seq1593 87.8 4e-12
seq2489 86.0 1e-11
>seq222
Length=84561
Score = 140 bits (154), Expect = 7e-28
Identities = 157/209 (75%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 232465 CGGTGA-TGAGGTCACCGTTGCGAGAGATCTGGGTGCTCACCTTGTTCCCAAATCCGACG 232523
|||||| ||||||| ||||||||| |||| | | ||||||| || || | |
Sbjct 63281 CGGTGAATGAGGTCGCCGTTGCGACTGATCGTGCAGGTCACCTTCTTGTTGAAGTCACCC 63340
Query 232524 CTGCCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACG 232583
||| |||| | |||| || || || ||||| |||||||||| ||| || ||||||
Sbjct 63341 GAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGGCGATACACG 63400
Query 232584 GTCTTGAAGAAGGTGATTTGGGGGTTGCCGGTCAGGTACACGTCCTGAGCGCCGTACGCG 232643
|||||| || ||||| ||||||||||| |||||||| | ||||||||| ||||| |||
Sbjct 63401 ACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCACCGTAAGCG 63460
Query 232644 ACGAGTTGCGAGAGTCCTCCAGCCATGTT 232672
||||||||| || || ||| |||| ||
Sbjct 63461 ACGAGTTGCATTAGACCGCCACCCATTTT 63489
Score = 136 bits (150), Expect = 9e-27
Identities = 157/210 (75%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 222451 CGGTGA-TGAGGTCACCGTTGCGAGAGATCTGGGTGCTCACCTTGTTCCCAAATCCGACG 222509
|||||| ||||||| ||||||||| |||| | | ||||||| || || | |
Sbjct 63281 CGGTGAATGAGGTCGCCGTTGCGACTGATCGTGCAGGTCACCTTCTTGTTGAAGTCACCC 63340
Query 222510 CTGCCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACG 222569
||| |||| | |||| || || || ||||| |||||||||| ||| || ||||||
Sbjct 63341 GAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGGCGATACACG 63400
Query 222570 GTCTTGAAGAAGGTGATCTGAGGGTTACCGGTCAGGTACACGTCCTGAGCGCCGTACGCG 222629
|||||| || |||||||| ||||| || |||||||| | ||||||||| ||||| |||
Sbjct 63401 ACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCACCGTAAGCG 63460
Query 222630 ACGAGTTGCGAGAGTCCTCCAGCCATGTTT 222659
||||||||| || || ||| |||| |||
Sbjct 63461 ACGAGTTGCATTAGACCGCCACCCATTTTT 63490
>seq1593
Length=23154
Score = 87.8 bits (96), Expect = 4e-12
Identities = 117/160 (73%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 334196 CTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAG 334255
||| ||||| |||| || ||||| || || || || ||| | ||||| || || |||||
Sbjct 13417 CTGGCCGTTGGCAATGGCACGCATGAGCGTCGACTTGCCCACGCCGTTGGGGCCGCACAG 13476
Query 334256 ACCGTAGCGGTTTCCACGCTTCAGATTGAACCGC-GTATTGTTCAGAAGAATTTTTCCAC 334314
||||||||| ||||||||||| | | ||| | ||||| || ||||| || |||
Sbjct 13477 GCCGTAGCGGCGGCCACGCTTCAG-GCGCAGCGCGGCGTTGTTGAGCAGAATCTTGGCAC 13535
Query 334315 CATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354
| || ||||| || || || || | ||||| ||||| ||
Sbjct 13536 CGTACGCCAGCGAGAACTCGCAGTTGCACAGCTCCTCGCC 13575
>seq2489
Length=12514
Score = 86.0 bits (94), Expect = 1e-11
Identities = 143/203 (70%), Gaps = 4/203 (2%)
Strand=Plus/Minus
Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496
||| |||| || || || || || || || || |||||||| | | ||||||||
Sbjct 7509 GTGTAAATGTAACGCGCGCTGGCAGCGTCTTTGCCGCCCTGCAAACGTGTGCCGAACTGA 7450
Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556
|| || || | ||||||||| ||||| || ||| | |||||||| ||||| ||
Sbjct 7449 CCGCTGGGATGCAGCAGGTTGATGTTGTTGCTGCCCACAAATTCCTGTGCCAGGTTGACA 7390
Query 297557 ATGGTCCCTTGCAGAGATGCT--TCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAAC 297614
|||| | || || | | || |||||||||||||||||||| || || || || ||
Sbjct 7389 ATGG-CGCTAGCCAGGCT-CTGCTCGCCATGGTGATAGGCGCTGTGTTCGGCCACATATG 7332
Query 297615 CGCTGAACTGTGCAACCTTCACG 297637
|| | ||| ||||||| ||||
Sbjct 7331 CGGACAGCTGGGCAACCTGCACG 7309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102782639821500
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |