Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlamydomonas_20sphaeroides_20[genbank_20GCA_5F001662425.1_202016- 04-26] 6,890 sequences; 122,189,241 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq222 140 7e-28 seq1593 87.8 4e-12 seq2489 86.0 1e-11 >seq222 Length=84561 Score = 140 bits (154), Expect = 7e-28 Identities = 157/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 232465 CGGTGA-TGAGGTCACCGTTGCGAGAGATCTGGGTGCTCACCTTGTTCCCAAATCCGACG 232523 |||||| ||||||| ||||||||| |||| | | ||||||| || || | | Sbjct 63281 CGGTGAATGAGGTCGCCGTTGCGACTGATCGTGCAGGTCACCTTCTTGTTGAAGTCACCC 63340 Query 232524 CTGCCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACG 232583 ||| |||| | |||| || || || ||||| |||||||||| ||| || |||||| Sbjct 63341 GAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGGCGATACACG 63400 Query 232584 GTCTTGAAGAAGGTGATTTGGGGGTTGCCGGTCAGGTACACGTCCTGAGCGCCGTACGCG 232643 |||||| || ||||| ||||||||||| |||||||| | ||||||||| ||||| ||| Sbjct 63401 ACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCACCGTAAGCG 63460 Query 232644 ACGAGTTGCGAGAGTCCTCCAGCCATGTT 232672 ||||||||| || || ||| |||| || Sbjct 63461 ACGAGTTGCATTAGACCGCCACCCATTTT 63489 Score = 136 bits (150), Expect = 9e-27 Identities = 157/210 (75%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 222451 CGGTGA-TGAGGTCACCGTTGCGAGAGATCTGGGTGCTCACCTTGTTCCCAAATCCGACG 222509 |||||| ||||||| ||||||||| |||| | | ||||||| || || | | Sbjct 63281 CGGTGAATGAGGTCGCCGTTGCGACTGATCGTGCAGGTCACCTTCTTGTTGAAGTCACCC 63340 Query 222510 CTGCCATTGATCGTTTGCTGAATCGATTCGATGGCGAAGTTGGTGTAACGACGGTACACG 222569 ||| |||| | |||| || || || ||||| |||||||||| ||| || |||||| Sbjct 63341 GAGCCGTTGAACACCTGCTCGATGGACTCCATGGCAAAGTTGGTGTGACGGCGATACACG 63400 Query 222570 GTCTTGAAGAAGGTGATCTGAGGGTTACCGGTCAGGTACACGTCCTGAGCGCCGTACGCG 222629 |||||| || |||||||| ||||| || |||||||| | ||||||||| ||||| ||| Sbjct 63401 ACCTTGAAAAACGTGATCTGGGGGTTGCCAGTCAGGTAGATGTCCTGAGCACCGTAAGCG 63460 Query 222630 ACGAGTTGCGAGAGTCCTCCAGCCATGTTT 222659 ||||||||| || || ||| |||| ||| Sbjct 63461 ACGAGTTGCATTAGACCGCCACCCATTTTT 63490 >seq1593 Length=23154 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 334196 CTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAG 334255 ||| ||||| |||| || ||||| || || || || ||| | ||||| || || ||||| Sbjct 13417 CTGGCCGTTGGCAATGGCACGCATGAGCGTCGACTTGCCCACGCCGTTGGGGCCGCACAG 13476 Query 334256 ACCGTAGCGGTTTCCACGCTTCAGATTGAACCGC-GTATTGTTCAGAAGAATTTTTCCAC 334314 ||||||||| ||||||||||| | | ||| | ||||| || ||||| || ||| Sbjct 13477 GCCGTAGCGGCGGCCACGCTTCAG-GCGCAGCGCGGCGTTGTTGAGCAGAATCTTGGCAC 13535 Query 334315 CATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 | || ||||| || || || || | ||||| ||||| || Sbjct 13536 CGTACGCCAGCGAGAACTCGCAGTTGCACAGCTCCTCGCC 13575 >seq2489 Length=12514 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 ||| |||| || || || || || || || || |||||||| | | |||||||| Sbjct 7509 GTGTAAATGTAACGCGCGCTGGCAGCGTCTTTGCCGCCCTGCAAACGTGTGCCGAACTGA 7450 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || || || | ||||||||| ||||| || ||| | |||||||| ||||| || Sbjct 7449 CCGCTGGGATGCAGCAGGTTGATGTTGTTGCTGCCCACAAATTCCTGTGCCAGGTTGACA 7390 Query 297557 ATGGTCCCTTGCAGAGATGCT--TCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAAC 297614 |||| | || || | | || |||||||||||||||||||| || || || || || Sbjct 7389 ATGG-CGCTAGCCAGGCT-CTGCTCGCCATGGTGATAGGCGCTGTGTTCGGCCACATATG 7332 Query 297615 CGCTGAACTGTGCAACCTTCACG 297637 || | ||| ||||||| |||| Sbjct 7331 CGGACAGCTGGGCAACCTGCACG 7309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102782639821500